miRNA display CGI


Results 1 - 20 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 138033 0.71 0.220214
Target:  5'- cGGCCCgGCGGCgGUGGCGgCGGUgGCg -3'
miRNA:   3'- -CUGGGgCGCCGgCGUCGU-GCCGaCGg -5'
23664 5' -65.1 NC_005261.1 + 137991 0.73 0.165617
Target:  5'- ---gCgGCGGCUGCGGCgGCGGCUGCg -3'
miRNA:   3'- cuggGgCGCCGGCGUCG-UGCCGACGg -5'
23664 5' -65.1 NC_005261.1 + 137959 0.75 0.120463
Target:  5'- cGGCUgcggCgGCGGCUGCGGCgGCGGCUGCg -3'
miRNA:   3'- -CUGG----GgCGCCGGCGUCG-UGCCGACGg -5'
23664 5' -65.1 NC_005261.1 + 137917 0.82 0.038267
Target:  5'- gGGCCCCGCgagcgggcccGGCUGCGGCgGCGGCUGCg -3'
miRNA:   3'- -CUGGGGCG----------CCGGCGUCG-UGCCGACGg -5'
23664 5' -65.1 NC_005261.1 + 137874 0.68 0.359315
Target:  5'- uGCuCCCGgGGCCaGCGGUGCcGCcGCCg -3'
miRNA:   3'- cUG-GGGCgCCGG-CGUCGUGcCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 137790 0.69 0.295921
Target:  5'- gGGCCCCGCcGcCCGC-GC-CGGC-GCCg -3'
miRNA:   3'- -CUGGGGCGcC-GGCGuCGuGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 137602 0.72 0.200015
Target:  5'- cACCCCGC-GCCcauagacuucaacGC-GCGCGGCUGCUa -3'
miRNA:   3'- cUGGGGCGcCGG-------------CGuCGUGCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 137003 0.68 0.359315
Target:  5'- cGAUCgUGCGGCCGgagAGCGCGGCcaGCa -3'
miRNA:   3'- -CUGGgGCGCCGGCg--UCGUGCCGa-CGg -5'
23664 5' -65.1 NC_005261.1 + 136916 0.77 0.084807
Target:  5'- gGGCCgCGCGGCCGCGGCGCauguGGUgguacauggGCCg -3'
miRNA:   3'- -CUGGgGCGCCGGCGUCGUG----CCGa--------CGG- -5'
23664 5' -65.1 NC_005261.1 + 136434 0.68 0.374632
Target:  5'- aGGCCCCcucGCGGgcgUCGCAGgggcaCGCGGCaGCCc -3'
miRNA:   3'- -CUGGGG---CGCC---GGCGUC-----GUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 135577 0.72 0.195802
Target:  5'- gGACCCCaucGUGGCCaCGGC-CGGC-GCCg -3'
miRNA:   3'- -CUGGGG---CGCCGGcGUCGuGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 135318 0.66 0.475265
Target:  5'- cGCCCUggGCGGCCGUgcuggacuuuGGCccggaGCGGUUcGCCc -3'
miRNA:   3'- cUGGGG--CGCCGGCG----------UCG-----UGCCGA-CGG- -5'
23664 5' -65.1 NC_005261.1 + 135118 0.82 0.038069
Target:  5'- gGACCCCGCGucuCCGCAGCGCGGCgggggagacgacGCCg -3'
miRNA:   3'- -CUGGGGCGCc--GGCGUCGUGCCGa-----------CGG- -5'
23664 5' -65.1 NC_005261.1 + 135047 0.72 0.210152
Target:  5'- cGACgCCUGCGGCgGCAGC--GGCccGCCg -3'
miRNA:   3'- -CUG-GGGCGCCGgCGUCGugCCGa-CGG- -5'
23664 5' -65.1 NC_005261.1 + 135018 0.77 0.089205
Target:  5'- gGGCCCgcaCGCGGCCGCGGC--GGCgagGCCg -3'
miRNA:   3'- -CUGGG---GCGCCGGCGUCGugCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 134751 0.71 0.225398
Target:  5'- cGGCaCCCGCGacccGCgGCGGCAUGGCgGaCCa -3'
miRNA:   3'- -CUG-GGGCGC----CGgCGUCGUGCCGaC-GG- -5'
23664 5' -65.1 NC_005261.1 + 134569 0.76 0.098657
Target:  5'- cGGCgCCGCGGCUGC-GCAgGGCggGCCu -3'
miRNA:   3'- -CUGgGGCGCCGGCGuCGUgCCGa-CGG- -5'
23664 5' -65.1 NC_005261.1 + 134353 0.71 0.220214
Target:  5'- -cCCCCGCGccGCCGCgcggGGgGCGGC-GCCg -3'
miRNA:   3'- cuGGGGCGC--CGGCG----UCgUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 134193 0.69 0.322971
Target:  5'- gGGCCUggCGCGGCucggcgCGCGGguCGCGGCgGCCg -3'
miRNA:   3'- -CUGGG--GCGCCG------GCGUC--GUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 134136 0.68 0.358561
Target:  5'- cGACCCCcugGGCUGCgccuGGCGCcacccggGGCUGCUg -3'
miRNA:   3'- -CUGGGGcg-CCGGCG----UCGUG-------CCGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.