miRNA display CGI


Results 21 - 40 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 134028 0.7 0.270667
Target:  5'- cGCCgCCGCGcUCGCGGcCAUGGCcgGCCa -3'
miRNA:   3'- cUGG-GGCGCcGGCGUC-GUGCCGa-CGG- -5'
23664 5' -65.1 NC_005261.1 + 133897 0.73 0.182316
Target:  5'- --gCCCGCGGCgCGCugcuGGCcUGGCUGCUg -3'
miRNA:   3'- cugGGGCGCCG-GCG----UCGuGCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 133846 0.73 0.182316
Target:  5'- cGCgCCGUGGCCgGCGcGCGCGaCUGCCg -3'
miRNA:   3'- cUGgGGCGCCGG-CGU-CGUGCcGACGG- -5'
23664 5' -65.1 NC_005261.1 + 133767 0.66 0.492426
Target:  5'- cGCCCCGUGccuccacGCCcucguGCGGCGCaucccgcccgGGCUGCUc -3'
miRNA:   3'- cUGGGGCGC-------CGG-----CGUCGUG----------CCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 133711 0.67 0.390385
Target:  5'- cGACCCCG-GcGCCGUcuacgucggggcGGCGCGGacaacGCCa -3'
miRNA:   3'- -CUGGGGCgC-CGGCG------------UCGUGCCga---CGG- -5'
23664 5' -65.1 NC_005261.1 + 133533 0.7 0.28944
Target:  5'- gGACCUcuCGgGGCgCGCAGCGCaGCaUGCUg -3'
miRNA:   3'- -CUGGG--GCgCCG-GCGUCGUGcCG-ACGG- -5'
23664 5' -65.1 NC_005261.1 + 133331 0.72 0.210152
Target:  5'- aGCuCCUGcCGGCaCGCGcGCGCGGCgcUGCCg -3'
miRNA:   3'- cUG-GGGC-GCCG-GCGU-CGUGCCG--ACGG- -5'
23664 5' -65.1 NC_005261.1 + 133294 0.72 0.195802
Target:  5'- cGCCUCGUGGCCGCcaAGgACgacuGGCUGCUc -3'
miRNA:   3'- cUGGGGCGCCGGCG--UCgUG----CCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 133026 0.7 0.258703
Target:  5'- --aCCCGCGGgCGCGccaccgcgcacGCACGuGCUGCg -3'
miRNA:   3'- cugGGGCGCCgGCGU-----------CGUGC-CGACGg -5'
23664 5' -65.1 NC_005261.1 + 132654 0.68 0.359315
Target:  5'- cGGCCCUaGCGGCCGC-GUGUGGgUGCg -3'
miRNA:   3'- -CUGGGG-CGCCGGCGuCGUGCCgACGg -5'
23664 5' -65.1 NC_005261.1 + 132605 0.73 0.161663
Target:  5'- cGGCCCgGCGaGCCGCcagggGGCGCuGGC-GCCg -3'
miRNA:   3'- -CUGGGgCGC-CGGCG-----UCGUG-CCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 132541 0.75 0.120463
Target:  5'- cGCCCuCGCGcGCgagggcgaggCGCAGUACGGCUGCg -3'
miRNA:   3'- cUGGG-GCGC-CG----------GCGUCGUGCCGACGg -5'
23664 5' -65.1 NC_005261.1 + 132455 0.69 0.295921
Target:  5'- uGCCCCuCGGCCGCccuccGCGcCGGCagcGCCu -3'
miRNA:   3'- cUGGGGcGCCGGCGu----CGU-GCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 132345 0.66 0.484261
Target:  5'- gGGCCauGCGcagcuuccGCCGCGGCGCG-CUcGCCg -3'
miRNA:   3'- -CUGGggCGC--------CGGCGUCGUGCcGA-CGG- -5'
23664 5' -65.1 NC_005261.1 + 132163 0.68 0.359315
Target:  5'- cGCCgCCGCuGCagGCAGCGCGGgCggggGCCc -3'
miRNA:   3'- cUGG-GGCGcCGg-CGUCGUGCC-Ga---CGG- -5'
23664 5' -65.1 NC_005261.1 + 132049 0.76 0.111805
Target:  5'- gGACCCCggggaggugGCGGCCGaGGuCGCGGCcGCCg -3'
miRNA:   3'- -CUGGGG---------CGCCGGCgUC-GUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 131976 0.67 0.423159
Target:  5'- uGCCgCGCGGCCaccaggccuucGCAGUcgcggACGGCgacaacuggGCCg -3'
miRNA:   3'- cUGGgGCGCCGG-----------CGUCG-----UGCCGa--------CGG- -5'
23664 5' -65.1 NC_005261.1 + 131838 0.69 0.330015
Target:  5'- cGGCgCCCGCcuGCUGCGGgguguccaaGCGGCUGCUu -3'
miRNA:   3'- -CUG-GGGCGc-CGGCGUCg--------UGCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 131794 0.67 0.406565
Target:  5'- cGACgCCGCGcccGCCGC-GCcugACGGCgcGCCg -3'
miRNA:   3'- -CUGgGGCGC---CGGCGuCG---UGCCGa-CGG- -5'
23664 5' -65.1 NC_005261.1 + 131553 0.68 0.359315
Target:  5'- aACgUgGCGGUCGCcgucGCcCGGCUGCCc -3'
miRNA:   3'- cUGgGgCGCCGGCGu---CGuGCCGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.