miRNA display CGI


Results 41 - 60 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 131413 0.7 0.258703
Target:  5'- -cCCCCGCcGCUGcCGGCAgCGGC-GCCg -3'
miRNA:   3'- cuGGGGCGcCGGC-GUCGU-GCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 131218 0.7 0.26463
Target:  5'- cGCCCgcguaCGUGGCCGCGcGCAUcgaGGCUGaCCu -3'
miRNA:   3'- cUGGG-----GCGCCGGCGU-CGUG---CCGAC-GG- -5'
23664 5' -65.1 NC_005261.1 + 131178 0.71 0.247176
Target:  5'- uGCCgCaGCGGCuacgccCGCGGCGCGGUcGCCg -3'
miRNA:   3'- cUGGgG-CGCCG------GCGUCGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 130783 0.73 0.178007
Target:  5'- cGCCCCGCgcuGGCCGCAcCGCGGaCgacGCCc -3'
miRNA:   3'- cUGGGGCG---CCGGCGUcGUGCC-Ga--CGG- -5'
23664 5' -65.1 NC_005261.1 + 130465 0.74 0.150304
Target:  5'- uGGCCCgaGCGGCuCGCGGCgugccucgGCGGCgaggGCCc -3'
miRNA:   3'- -CUGGGg-CGCCG-GCGUCG--------UGCCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 129941 0.68 0.337172
Target:  5'- cGCCCaccgaGUGGUacaucUGCAGCAgGGCgGCCa -3'
miRNA:   3'- cUGGGg----CGCCG-----GCGUCGUgCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 129721 0.74 0.154007
Target:  5'- --gCCCGcCGGCUGCAGCggcaggGCGGCgggGCCc -3'
miRNA:   3'- cugGGGC-GCCGGCGUCG------UGCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 129591 0.66 0.493337
Target:  5'- cGCgCCGCGGgacaCGCGGCaauuucGCGGCgggGUCg -3'
miRNA:   3'- cUGgGGCGCCg---GCGUCG------UGCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 129310 0.67 0.431607
Target:  5'- cGCCCCGCGcCUGCgcuGGCGCcGCgucGCCg -3'
miRNA:   3'- cUGGGGCGCcGGCG---UCGUGcCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 128803 0.72 0.212132
Target:  5'- cGGgCCCGCGGCggggcuCGCGcugcggcugacgcucGCGCGGCUGgCCg -3'
miRNA:   3'- -CUgGGGCGCCG------GCGU---------------CGUGCCGAC-GG- -5'
23664 5' -65.1 NC_005261.1 + 128529 0.66 0.440153
Target:  5'- -uCCUgGCGGCUGgAGUGCuGCUGCg -3'
miRNA:   3'- cuGGGgCGCCGGCgUCGUGcCGACGg -5'
23664 5' -65.1 NC_005261.1 + 127827 0.69 0.308545
Target:  5'- cGCgCUCGCGGCCGCgagcagcggacggGGCggucGCGGC-GCCa -3'
miRNA:   3'- cUG-GGGCGCCGGCG-------------UCG----UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 127759 0.68 0.374632
Target:  5'- gGGCCgCgGCGGgCGCGaagacGCcCGGCUGCUc -3'
miRNA:   3'- -CUGG-GgCGCCgGCGU-----CGuGCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 127678 0.68 0.374632
Target:  5'- gGACggCgGCGGCCGCuGCcccgGCGGC-GCCg -3'
miRNA:   3'- -CUGg-GgCGCCGGCGuCG----UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 127489 0.66 0.466353
Target:  5'- aGACgCUgGCGGCUGCcugccgGGCGuacuCGGCgGCCa -3'
miRNA:   3'- -CUG-GGgCGCCGGCG------UCGU----GCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 127331 0.66 0.457529
Target:  5'- --gCCCGCgggGGCCggaGCGGCGgGGCgcuggGCCc -3'
miRNA:   3'- cugGGGCG---CCGG---CGUCGUgCCGa----CGG- -5'
23664 5' -65.1 NC_005261.1 + 127302 0.7 0.270667
Target:  5'- -uCCCCGcCGGCUgGCGGUggGGCccUGCCg -3'
miRNA:   3'- cuGGGGC-GCCGG-CGUCGugCCG--ACGG- -5'
23664 5' -65.1 NC_005261.1 + 127007 0.69 0.316039
Target:  5'- cGACCCC---GCCGCAG-GCGGCgGCCc -3'
miRNA:   3'- -CUGGGGcgcCGGCGUCgUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 126524 0.66 0.493337
Target:  5'- gGGCgCCCGCGcccGCCGCgccucGGcCACGcGCcGCCg -3'
miRNA:   3'- -CUG-GGGCGC---CGGCG-----UC-GUGC-CGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 126495 0.69 0.309221
Target:  5'- cGCCaCCaGCuGCCGCAG-GCGGuCUGCCu -3'
miRNA:   3'- cUGG-GG-CGcCGGCGUCgUGCC-GACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.