miRNA display CGI


Results 1 - 20 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 98288 0.66 0.493337
Target:  5'- cGCCCgGCGcGuCCGCGGCcucgGgGGCgggcGCCg -3'
miRNA:   3'- cUGGGgCGC-C-GGCGUCG----UgCCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 32533 0.81 0.043561
Target:  5'- cGGCCCCGgcccCGGCCGCGGCGCGG--GCCg -3'
miRNA:   3'- -CUGGGGC----GCCGGCGUCGUGCCgaCGG- -5'
23664 5' -65.1 NC_005261.1 + 30238 0.81 0.045755
Target:  5'- uGGCCCCGCuGGCgcgguacucgacgCGCGGCGCGGCgGCCc -3'
miRNA:   3'- -CUGGGGCG-CCG-------------GCGUCGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 3509 0.81 0.049568
Target:  5'- cGCCagCGCGGCCGCcuccAGCGCGGCgGCCg -3'
miRNA:   3'- cUGGg-GCGCCGGCG----UCGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 10524 0.8 0.050471
Target:  5'- gGGCCCCGCGGCgCGCucgcugucgcccccGGCGCGcCUGCCg -3'
miRNA:   3'- -CUGGGGCGCCG-GCG--------------UCGUGCcGACGG- -5'
23664 5' -65.1 NC_005261.1 + 102784 0.8 0.05219
Target:  5'- aGGCCUCGCcccGGCCGCgAGCGCGGCgcccaGCCg -3'
miRNA:   3'- -CUGGGGCG---CCGGCG-UCGUGCCGa----CGG- -5'
23664 5' -65.1 NC_005261.1 + 28791 0.8 0.053552
Target:  5'- gGGCgCUCGCGGCCGCGGCGgaGGCaGCCg -3'
miRNA:   3'- -CUG-GGGCGCCGGCGUCGUg-CCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 101082 0.8 0.054948
Target:  5'- cACgCCCGCGGCCGCcugcAGCGCGGCcGCg -3'
miRNA:   3'- cUG-GGGCGCCGGCG----UCGUGCCGaCGg -5'
23664 5' -65.1 NC_005261.1 + 102315 0.8 0.054948
Target:  5'- cGCgCCGCGGCCGCGGCGC-GCaGCCg -3'
miRNA:   3'- cUGgGGCGCCGGCGUCGUGcCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 31202 0.81 0.043561
Target:  5'- cGCCCCGaGGUCGCGGCGCGGCUcGCg -3'
miRNA:   3'- cUGGGGCgCCGGCGUCGUGCCGA-CGg -5'
23664 5' -65.1 NC_005261.1 + 1399 0.82 0.042448
Target:  5'- gGGCgCCGCGGCCGCGGCGgCGGCggggGCg -3'
miRNA:   3'- -CUGgGGCGCCGGCGUCGU-GCCGa---CGg -5'
23664 5' -65.1 NC_005261.1 + 137917 0.82 0.038267
Target:  5'- gGGCCCCGCgagcgggcccGGCUGCGGCgGCGGCUGCg -3'
miRNA:   3'- -CUGGGGCG----------CCGGCGUCG-UGCCGACGg -5'
23664 5' -65.1 NC_005261.1 + 121384 0.89 0.011915
Target:  5'- cGCCCCGCGGCgGCGGCgccugcccgagugcgACGGCUGCCg -3'
miRNA:   3'- cUGGGGCGCCGgCGUCG---------------UGCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 4300 0.88 0.014937
Target:  5'- gGGCCCCGCGGCCGCcgcguagcGCGCGGCcGCCu -3'
miRNA:   3'- -CUGGGGCGCCGGCGu-------CGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 106218 0.87 0.017485
Target:  5'- aGCgCCCGCGGCCGCcuGGCGCGGCcGCCg -3'
miRNA:   3'- cUG-GGGCGCCGGCG--UCGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 32316 0.85 0.024576
Target:  5'- cGCCgCCGCGGCCGCGGCGCccGGCgugGCCu -3'
miRNA:   3'- cUGG-GGCGCCGGCGUCGUG--CCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 100689 0.84 0.030281
Target:  5'- aGugCaCCGCGGCCGCGGCGCGcGCcGCCc -3'
miRNA:   3'- -CugG-GGCGCCGGCGUCGUGC-CGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 106576 0.83 0.031081
Target:  5'- cGGCCCCGgGGCCGCcGCGCGGC-GCUc -3'
miRNA:   3'- -CUGGGGCgCCGGCGuCGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 135118 0.82 0.038069
Target:  5'- gGACCCCGCGucuCCGCAGCGCGGCgggggagacgacGCCg -3'
miRNA:   3'- -CUGGGGCGCc--GGCGUCGUGCCGa-----------CGG- -5'
23664 5' -65.1 NC_005261.1 + 234 0.82 0.038267
Target:  5'- gGGCCCCGCgagcgggcccGGCUGCGGCgGCGGCUGCg -3'
miRNA:   3'- -CUGGGGCG----------CCGGCGUCG-UGCCGACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.