Results 41 - 60 of 704 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23664 | 5' | -65.1 | NC_005261.1 | + | 100689 | 0.84 | 0.030281 |
Target: 5'- aGugCaCCGCGGCCGCGGCGCGcGCcGCCc -3' miRNA: 3'- -CugG-GGCGCCGGCGUCGUGC-CGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 32316 | 0.85 | 0.024576 |
Target: 5'- cGCCgCCGCGGCCGCGGCGCccGGCgugGCCu -3' miRNA: 3'- cUGG-GGCGCCGGCGUCGUG--CCGa--CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 106218 | 0.87 | 0.017485 |
Target: 5'- aGCgCCCGCGGCCGCcuGGCGCGGCcGCCg -3' miRNA: 3'- cUG-GGGCGCCGGCG--UCGUGCCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 4300 | 0.88 | 0.014937 |
Target: 5'- gGGCCCCGCGGCCGCcgcguagcGCGCGGCcGCCu -3' miRNA: 3'- -CUGGGGCGCCGGCGu-------CGUGCCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 121384 | 0.89 | 0.011915 |
Target: 5'- cGCCCCGCGGCgGCGGCgccugcccgagugcgACGGCUGCCg -3' miRNA: 3'- cUGGGGCGCCGgCGUCG---------------UGCCGACGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 3509 | 0.81 | 0.049568 |
Target: 5'- cGCCagCGCGGCCGCcuccAGCGCGGCgGCCg -3' miRNA: 3'- cUGGg-GCGCCGGCG----UCGUGCCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 10524 | 0.8 | 0.050471 |
Target: 5'- gGGCCCCGCGGCgCGCucgcugucgcccccGGCGCGcCUGCCg -3' miRNA: 3'- -CUGGGGCGCCG-GCG--------------UCGUGCcGACGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 28283 | 0.78 | 0.070449 |
Target: 5'- cGCCgCCGCGGCCGCGGUcgucuccuucguucGCGGC-GCCc -3' miRNA: 3'- cUGG-GGCGCCGGCGUCG--------------UGCCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 66278 | 0.79 | 0.067457 |
Target: 5'- gGGCgCCCGCGGCUGUcgcagugcgucaGGCGCGGCacgGCCa -3' miRNA: 3'- -CUG-GGGCGCCGGCG------------UCGUGCCGa--CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 119110 | 0.79 | 0.064919 |
Target: 5'- aGACCcuuaaagauguaggCCGCGGCCGCGGCGCGGCcaucucggauccGCCc -3' miRNA: 3'- -CUGG--------------GGCGCCGGCGUCGUGCCGa-----------CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 98725 | 0.79 | 0.062473 |
Target: 5'- cGGCCUugggggcaCGCGGCCGCGcgggcguuggccGCGCGGUUGCCg -3' miRNA: 3'- -CUGGG--------GCGCCGGCGU------------CGUGCCGACGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 68122 | 0.79 | 0.062473 |
Target: 5'- aGCUgCGCgGGCCGCGGCGCGGCgaccgcGCCg -3' miRNA: 3'- cUGGgGCG-CCGGCGUCGUGCCGa-----CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 118228 | 0.79 | 0.060892 |
Target: 5'- uGACggCCGCGGCCGCGGCcuacgccgucuGCGGCgUGCCg -3' miRNA: 3'- -CUGg-GGCGCCGGCGUCG-----------UGCCG-ACGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 42642 | 0.8 | 0.05935 |
Target: 5'- cGGCCgCCGCGGCCGCgcggaaccAGCcaaGCGGCgGCCg -3' miRNA: 3'- -CUGG-GGCGCCGGCG--------UCG---UGCCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 4881 | 0.8 | 0.056234 |
Target: 5'- cGGCCgccucagCCGCGGCCGCcucggcuucGGCgGCGGCUGCCu -3' miRNA: 3'- -CUGG-------GGCGCCGGCG---------UCG-UGCCGACGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 103597 | 0.8 | 0.056234 |
Target: 5'- cGCCgCCGUGGCCGCGGCggcagcgcgggagGCGGCggcgGCCa -3' miRNA: 3'- cUGG-GGCGCCGGCGUCG-------------UGCCGa---CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 102315 | 0.8 | 0.054948 |
Target: 5'- cGCgCCGCGGCCGCGGCGC-GCaGCCg -3' miRNA: 3'- cUGgGGCGCCGGCGUCGUGcCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 101082 | 0.8 | 0.054948 |
Target: 5'- cACgCCCGCGGCCGCcugcAGCGCGGCcGCg -3' miRNA: 3'- cUG-GGGCGCCGGCG----UCGUGCCGaCGg -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 28791 | 0.8 | 0.053552 |
Target: 5'- gGGCgCUCGCGGCCGCGGCGgaGGCaGCCg -3' miRNA: 3'- -CUG-GGGCGCCGGCGUCGUg-CCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 102784 | 0.8 | 0.05219 |
Target: 5'- aGGCCUCGCcccGGCCGCgAGCGCGGCgcccaGCCg -3' miRNA: 3'- -CUGGGGCG---CCGGCG-UCGUGCCGa----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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