miRNA display CGI


Results 1 - 20 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23665 5' -64.5 NC_005261.1 + 95462 0.66 0.524914
Target:  5'- gAGCCuguCGGcGCuggagaagaucaAGGCCCGCGGCg--- -3'
miRNA:   3'- gUCGGu--GCC-CG------------UCCGGGUGCCGgacc -5'
23665 5' -64.5 NC_005261.1 + 36572 0.66 0.524914
Target:  5'- gAGCUgaGCGGG--GGCCCgccGCGGCCaccgGGg -3'
miRNA:   3'- gUCGG--UGCCCguCCGGG---UGCCGGa---CC- -5'
23665 5' -64.5 NC_005261.1 + 3344 0.66 0.524914
Target:  5'- -cGCCGCGGcGCccGGCgCGCcGGCCUucaGGg -3'
miRNA:   3'- guCGGUGCC-CGu-CCGgGUG-CCGGA---CC- -5'
23665 5' -64.5 NC_005261.1 + 31177 0.66 0.524914
Target:  5'- -cGCCGCGGcGCuggcGGCCUACuGCCg-- -3'
miRNA:   3'- guCGGUGCC-CGu---CCGGGUGcCGGacc -5'
23665 5' -64.5 NC_005261.1 + 47817 0.66 0.524914
Target:  5'- -cGCCACcaGGGCgcucacguacaGGGCCUuccacgucGCGGCgUGGc -3'
miRNA:   3'- guCGGUG--CCCG-----------UCCGGG--------UGCCGgACC- -5'
23665 5' -64.5 NC_005261.1 + 9897 0.66 0.523977
Target:  5'- cCGGcCCGCccgGGGCAaGCCCGCcccagccGGCCUGc -3'
miRNA:   3'- -GUC-GGUG---CCCGUcCGGGUG-------CCGGACc -5'
23665 5' -64.5 NC_005261.1 + 9840 0.66 0.523977
Target:  5'- cCGGcCCGCccgGGGCAaGCCCGCcccagccGGCCUGc -3'
miRNA:   3'- -GUC-GGUG---CCCGUcCGGGUG-------CCGGACc -5'
23665 5' -64.5 NC_005261.1 + 73274 0.66 0.523977
Target:  5'- aGGCaguaGCGGGCgaagggguagcacAGGCagGCGGCCaGGg -3'
miRNA:   3'- gUCGg---UGCCCG-------------UCCGggUGCCGGaCC- -5'
23665 5' -64.5 NC_005261.1 + 56812 0.66 0.523977
Target:  5'- gGGCCACGGuGUuccuGGUgCCGCGGCggcacggcaagacCUGGu -3'
miRNA:   3'- gUCGGUGCC-CGu---CCG-GGUGCCG-------------GACC- -5'
23665 5' -64.5 NC_005261.1 + 81449 0.66 0.523977
Target:  5'- -cGCgGCGGGCgccgccagcagcaGGGCCCACGccGCCc-- -3'
miRNA:   3'- guCGgUGCCCG-------------UCCGGGUGC--CGGacc -5'
23665 5' -64.5 NC_005261.1 + 100609 0.66 0.519301
Target:  5'- gCGGCCGCgcaGGuGCAGGUCCcgcucgcacaggcgcGCGGCCc-- -3'
miRNA:   3'- -GUCGGUG---CC-CGUCCGGG---------------UGCCGGacc -5'
23665 5' -64.5 NC_005261.1 + 83048 0.66 0.519301
Target:  5'- -cGCCGCGGGaggGGGCuCCcugcgcgcccccgcgGCGGCC-GGc -3'
miRNA:   3'- guCGGUGCCCg--UCCG-GG---------------UGCCGGaCC- -5'
23665 5' -64.5 NC_005261.1 + 102633 0.66 0.515571
Target:  5'- uCGGCCGC-GGCuucGUCCGCGGCCc-- -3'
miRNA:   3'- -GUCGGUGcCCGuc-CGGGUGCCGGacc -5'
23665 5' -64.5 NC_005261.1 + 118401 0.66 0.515571
Target:  5'- gCGGCCGCGGGCGccgcaGCCgCGCuGGCUg-- -3'
miRNA:   3'- -GUCGGUGCCCGUc----CGG-GUG-CCGGacc -5'
23665 5' -64.5 NC_005261.1 + 87997 0.66 0.515571
Target:  5'- cCGGCUccucccccgGCGGGCccguuaaagcGGCCgGCGguGCCUGGg -3'
miRNA:   3'- -GUCGG---------UGCCCGu---------CCGGgUGC--CGGACC- -5'
23665 5' -64.5 NC_005261.1 + 117194 0.66 0.515571
Target:  5'- gCGGUgACGuucuccuaccGGCGcGCCCGCuGCCUGGg -3'
miRNA:   3'- -GUCGgUGC----------CCGUcCGGGUGcCGGACC- -5'
23665 5' -64.5 NC_005261.1 + 97643 0.66 0.515571
Target:  5'- gCGGgCGCGGGUgccgcaccugggGGGCCgGCguccgcggGGCUUGGg -3'
miRNA:   3'- -GUCgGUGCCCG------------UCCGGgUG--------CCGGACC- -5'
23665 5' -64.5 NC_005261.1 + 111781 0.66 0.515571
Target:  5'- -cGCC-CGGGguGuGcCCCugGacGCCUGGc -3'
miRNA:   3'- guCGGuGCCCguC-C-GGGugC--CGGACC- -5'
23665 5' -64.5 NC_005261.1 + 39870 0.66 0.514641
Target:  5'- aGGCaCACGGccaGCAGGCCgcgcgCGCGGCugugcagCUGGc -3'
miRNA:   3'- gUCG-GUGCC---CGUCCGG-----GUGCCG-------GACC- -5'
23665 5' -64.5 NC_005261.1 + 50792 0.66 0.512781
Target:  5'- gCGGCCGCcccGGCgccgccgccaugacGGGCUCcgcGCGGCUUGGc -3'
miRNA:   3'- -GUCGGUGc--CCG--------------UCCGGG---UGCCGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.