miRNA display CGI


Results 1 - 20 of 298 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23665 5' -64.5 NC_005261.1 + 329 0.66 0.469954
Target:  5'- gCGGCgGCGGcuGCGgcGGCCCGCaGCCcGGc -3'
miRNA:   3'- -GUCGgUGCC--CGU--CCGGGUGcCGGaCC- -5'
23665 5' -64.5 NC_005261.1 + 59792 0.66 0.478919
Target:  5'- aCGGCgGCGGGCggcAGGCCgGCGuggcGCCg-- -3'
miRNA:   3'- -GUCGgUGCCCG---UCCGGgUGC----CGGacc -5'
23665 5' -64.5 NC_005261.1 + 23796 0.66 0.469063
Target:  5'- -cGCCG-GGGCAGGCCgGCuggggcgGGCUUGc -3'
miRNA:   3'- guCGGUgCCCGUCCGGgUG-------CCGGACc -5'
23665 5' -64.5 NC_005261.1 + 119649 0.66 0.469954
Target:  5'- -cGCCACcGGC-GGCgCGCG-CCUGGa -3'
miRNA:   3'- guCGGUGcCCGuCCGgGUGCcGGACC- -5'
23665 5' -64.5 NC_005261.1 + 46104 0.66 0.478919
Target:  5'- aCGGCCGgGGGCcguGGUCCGCGuCCa-- -3'
miRNA:   3'- -GUCGGUgCCCGu--CCGGGUGCcGGacc -5'
23665 5' -64.5 NC_005261.1 + 47817 0.66 0.524914
Target:  5'- -cGCCACcaGGGCgcucacguacaGGGCCUuccacgucGCGGCgUGGc -3'
miRNA:   3'- guCGGUG--CCCG-----------UCCGGG--------UGCCGgACC- -5'
23665 5' -64.5 NC_005261.1 + 3811 0.66 0.475323
Target:  5'- gCAGCCGCucgcgcgcugccGCGGGCCCG-GGCgCUGGc -3'
miRNA:   3'- -GUCGGUGcc----------CGUCCGGGUgCCG-GACC- -5'
23665 5' -64.5 NC_005261.1 + 36977 0.66 0.469063
Target:  5'- gAGCUcgguGCGGGCuccagccGGaGCCCGCGGgCUGc -3'
miRNA:   3'- gUCGG----UGCCCG-------UC-CGGGUGCCgGACc -5'
23665 5' -64.5 NC_005261.1 + 20582 0.66 0.484337
Target:  5'- cCGGCgGCGcGGguGGCCUACGucgacacagcgccCCUGGc -3'
miRNA:   3'- -GUCGgUGC-CCguCCGGGUGCc------------GGACC- -5'
23665 5' -64.5 NC_005261.1 + 121266 0.66 0.469954
Target:  5'- -cGCCGCagacgGGGCGGccGCCC-CGGCCUc- -3'
miRNA:   3'- guCGGUG-----CCCGUC--CGGGuGCCGGAcc -5'
23665 5' -64.5 NC_005261.1 + 34717 0.66 0.469954
Target:  5'- gAGCCucaGCGGuCGGcGCCCccugGCGGCCgcgGGg -3'
miRNA:   3'- gUCGG---UGCCcGUC-CGGG----UGCCGGa--CC- -5'
23665 5' -64.5 NC_005261.1 + 30406 0.66 0.469954
Target:  5'- aGGacaUGCGGGCcgGGGCaCCGCGGgcggaCCUGGa -3'
miRNA:   3'- gUCg--GUGCCCG--UCCG-GGUGCC-----GGACC- -5'
23665 5' -64.5 NC_005261.1 + 23853 0.66 0.469063
Target:  5'- -cGCCG-GGGCAGGCCgGCuggggcgGGCUUGc -3'
miRNA:   3'- guCGGUgCCCGUCCGGgUG-------CCGGACc -5'
23665 5' -64.5 NC_005261.1 + 138000 0.66 0.469954
Target:  5'- gCGGCgGCGGcuGCGgcGGCCCGCaGCCcGGc -3'
miRNA:   3'- -GUCGgUGCC--CGU--CCGGGUGcCGGaCC- -5'
23665 5' -64.5 NC_005261.1 + 98667 0.66 0.469954
Target:  5'- cCAGgCGaGGGCGGGCuCCGCcggGGCC-GGa -3'
miRNA:   3'- -GUCgGUgCCCGUCCG-GGUG---CCGGaCC- -5'
23665 5' -64.5 NC_005261.1 + 122305 0.66 0.478018
Target:  5'- -uGCCGCaGGCgacgcccGGGCCgGCGGUCaGGu -3'
miRNA:   3'- guCGGUGcCCG-------UCCGGgUGCCGGaCC- -5'
23665 5' -64.5 NC_005261.1 + 14360 0.66 0.469954
Target:  5'- gCAGCCGCGGccggggcggcgcGguGGCCCGCaucGCCa-- -3'
miRNA:   3'- -GUCGGUGCC------------CguCCGGGUGc--CGGacc -5'
23665 5' -64.5 NC_005261.1 + 30694 0.66 0.469954
Target:  5'- aCGGggACGGGgAGGCCCGCGGgagcCCcGGc -3'
miRNA:   3'- -GUCggUGCCCgUCCGGGUGCC----GGaCC- -5'
23665 5' -64.5 NC_005261.1 + 54437 0.66 0.469954
Target:  5'- gGGCCGCGucgcGCAguGGCCCAUaacaauuucagGGUCUGGc -3'
miRNA:   3'- gUCGGUGCc---CGU--CCGGGUG-----------CCGGACC- -5'
23665 5' -64.5 NC_005261.1 + 121783 0.66 0.469954
Target:  5'- uGGCCGCGgccGGCGGGCUgggcagggggCGCGuGgCUGGg -3'
miRNA:   3'- gUCGGUGC---CCGUCCGG----------GUGC-CgGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.