miRNA display CGI


Results 1 - 20 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23665 5' -64.5 NC_005261.1 + 38054 1.08 0.000494
Target:  5'- aCAGCCACGGGCAGGCCCACGGCCUGGc -3'
miRNA:   3'- -GUCGGUGCCCGUCCGGGUGCCGGACC- -5'
23665 5' -64.5 NC_005261.1 + 122359 0.82 0.04267
Target:  5'- gCGGCCGCGGcucGCGcGGCCCcaccGCGGCCUGGg -3'
miRNA:   3'- -GUCGGUGCC---CGU-CCGGG----UGCCGGACC- -5'
23665 5' -64.5 NC_005261.1 + 32544 0.81 0.04857
Target:  5'- cCGGCCGCGGcGCGGGCCgGCGcGCgUGGa -3'
miRNA:   3'- -GUCGGUGCC-CGUCCGGgUGC-CGgACC- -5'
23665 5' -64.5 NC_005261.1 + 68594 0.81 0.051146
Target:  5'- gGGCCGCGGGagcgGGGCCgACGGCgUGGg -3'
miRNA:   3'- gUCGGUGCCCg---UCCGGgUGCCGgACC- -5'
23665 5' -64.5 NC_005261.1 + 34926 0.8 0.060782
Target:  5'- gCGGCCACgcgggGGGCggccggcgcgacccGGGCCCgGCGGCCUGGa -3'
miRNA:   3'- -GUCGGUG-----CCCG--------------UCCGGG-UGCCGGACC- -5'
23665 5' -64.5 NC_005261.1 + 21218 0.78 0.081134
Target:  5'- cCGGCCGCGacGGCGGGCCCGuCGG-CUGGc -3'
miRNA:   3'- -GUCGGUGC--CCGUCCGGGU-GCCgGACC- -5'
23665 5' -64.5 NC_005261.1 + 125294 0.78 0.089792
Target:  5'- aGGCCGCGGGCgccggacccgcGGGCgcuCCGCGGCCUcGGc -3'
miRNA:   3'- gUCGGUGCCCG-----------UCCG---GGUGCCGGA-CC- -5'
23665 5' -64.5 NC_005261.1 + 28779 0.77 0.094444
Target:  5'- gGGCCGCGGcGCGGGCgCuCGCGGCCgcggcGGa -3'
miRNA:   3'- gUCGGUGCC-CGUCCG-G-GUGCCGGa----CC- -5'
23665 5' -64.5 NC_005261.1 + 130860 0.77 0.096855
Target:  5'- -cGCC-CGGcCGGGCgCCGCGGCCUGGc -3'
miRNA:   3'- guCGGuGCCcGUCCG-GGUGCCGGACC- -5'
23665 5' -64.5 NC_005261.1 + 21801 0.77 0.101852
Target:  5'- gCAGCCGCcggccGGGcCGGGCCCGCGGCg-GGc -3'
miRNA:   3'- -GUCGGUG-----CCC-GUCCGGGUGCCGgaCC- -5'
23665 5' -64.5 NC_005261.1 + 32319 0.77 0.104441
Target:  5'- -cGCCGCGGccGCGGcGCCCGgcgUGGCCUGGg -3'
miRNA:   3'- guCGGUGCC--CGUC-CGGGU---GCCGGACC- -5'
23665 5' -64.5 NC_005261.1 + 123413 0.76 0.109805
Target:  5'- cCGGCCAgGGGCGGGCUCGCcacgGGCCg-- -3'
miRNA:   3'- -GUCGGUgCCCGUCCGGGUG----CCGGacc -5'
23665 5' -64.5 NC_005261.1 + 124245 0.76 0.112583
Target:  5'- -cGCCGCGGGCAGGCgCCGCGcggcGCCg-- -3'
miRNA:   3'- guCGGUGCCCGUCCG-GGUGC----CGGacc -5'
23665 5' -64.5 NC_005261.1 + 72869 0.76 0.115426
Target:  5'- uGGaCCGCGGGCAGGUCCGCcccGCCgccgGGg -3'
miRNA:   3'- gUC-GGUGCCCGUCCGGGUGc--CGGa---CC- -5'
23665 5' -64.5 NC_005261.1 + 117673 0.76 0.115426
Target:  5'- -cGCCGCGcccGGcCGGGCCCGCGGCgaGGc -3'
miRNA:   3'- guCGGUGC---CC-GUCCGGGUGCCGgaCC- -5'
23665 5' -64.5 NC_005261.1 + 118925 0.76 0.124363
Target:  5'- -cGCCGCGGGCGcGGCgCCGCGcGgCUGGc -3'
miRNA:   3'- guCGGUGCCCGU-CCG-GGUGC-CgGACC- -5'
23665 5' -64.5 NC_005261.1 + 27460 0.75 0.127483
Target:  5'- gGGCCgccccgcgggGCGGGCAGGCCCucccCGGgcgcaCCUGGa -3'
miRNA:   3'- gUCGG----------UGCCCGUCCGGGu---GCC-----GGACC- -5'
23665 5' -64.5 NC_005261.1 + 68295 0.75 0.133939
Target:  5'- cCGGCCGCGGGCGcGGaCCUcuGCGGCCg-- -3'
miRNA:   3'- -GUCGGUGCCCGU-CC-GGG--UGCCGGacc -5'
23665 5' -64.5 NC_005261.1 + 108260 0.75 0.133939
Target:  5'- -cGCCGCGGcCAGcGUcuCCACGGCCUGGu -3'
miRNA:   3'- guCGGUGCCcGUC-CG--GGUGCCGGACC- -5'
23665 5' -64.5 NC_005261.1 + 32224 0.75 0.14035
Target:  5'- cCGGCCGCGGcGguGGCCUucugcGCGGCCgcgcugcUGGa -3'
miRNA:   3'- -GUCGGUGCC-CguCCGGG-----UGCCGG-------ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.