miRNA display CGI


Results 21 - 40 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23665 5' -64.5 NC_005261.1 + 15259 0.66 0.509998
Target:  5'- gGGCCGCGaucgccccGGCGGcGCCgccggggcgcgcgguCGCGGCCUccGGg -3'
miRNA:   3'- gUCGGUGC--------CCGUC-CGG---------------GUGCCGGA--CC- -5'
23665 5' -64.5 NC_005261.1 + 14053 0.66 0.506296
Target:  5'- gCGGuCCGCaGGCAGGCcgcguCCAgGGCCa-- -3'
miRNA:   3'- -GUC-GGUGcCCGUCCG-----GGUgCCGGacc -5'
23665 5' -64.5 NC_005261.1 + 4931 0.66 0.506296
Target:  5'- gCGGCCGCGaGcGCccGCgCCGCGGCCcaGGc -3'
miRNA:   3'- -GUCGGUGC-C-CGucCG-GGUGCCGGa-CC- -5'
23665 5' -64.5 NC_005261.1 + 68186 0.66 0.506296
Target:  5'- -cGCCGCGGGCccccucGCCCccgccgccggcGCGGCCg-- -3'
miRNA:   3'- guCGGUGCCCGuc----CGGG-----------UGCCGGacc -5'
23665 5' -64.5 NC_005261.1 + 10510 0.66 0.506296
Target:  5'- gCGGCCGCcgcuGCGGGcCCCGCGGCg--- -3'
miRNA:   3'- -GUCGGUGcc--CGUCC-GGGUGCCGgacc -5'
23665 5' -64.5 NC_005261.1 + 70868 0.66 0.506296
Target:  5'- gCGGCCGcCGuGGCGuGGCCgGCGGUgcacaUGGc -3'
miRNA:   3'- -GUCGGU-GC-CCGU-CCGGgUGCCGg----ACC- -5'
23665 5' -64.5 NC_005261.1 + 3391 0.66 0.506296
Target:  5'- cCAGCCGCGccGGCAcuuccGCCgGCGGgCUGa -3'
miRNA:   3'- -GUCGGUGC--CCGUc----CGGgUGCCgGACc -5'
23665 5' -64.5 NC_005261.1 + 83214 0.66 0.503527
Target:  5'- uGGUCGCaGGuGCAcagcgccagucgccGGCCCACGGacucgcCCUGGu -3'
miRNA:   3'- gUCGGUG-CC-CGU--------------CCGGGUGCC------GGACC- -5'
23665 5' -64.5 NC_005261.1 + 93903 0.66 0.497093
Target:  5'- cCAGCgacuGCGGGCgcGGcGCCCGCgGGCUUGc -3'
miRNA:   3'- -GUCGg---UGCCCG--UC-CGGGUG-CCGGACc -5'
23665 5' -64.5 NC_005261.1 + 31209 0.66 0.497093
Target:  5'- aGGUCGCGGcGC-GGCUCGCGGaCCa-- -3'
miRNA:   3'- gUCGGUGCC-CGuCCGGGUGCC-GGacc -5'
23665 5' -64.5 NC_005261.1 + 32180 0.66 0.497093
Target:  5'- uGGCCuGCGGGCGGcGCgCGCuGGagCUGGc -3'
miRNA:   3'- gUCGG-UGCCCGUC-CGgGUG-CCg-GACC- -5'
23665 5' -64.5 NC_005261.1 + 97370 0.66 0.497093
Target:  5'- aCGGCC-CGGGCGugucGCCgCGCGGCUUu- -3'
miRNA:   3'- -GUCGGuGCCCGUc---CGG-GUGCCGGAcc -5'
23665 5' -64.5 NC_005261.1 + 86867 0.66 0.497093
Target:  5'- -cGCCGcCGGGCGcGGCggccuuggCCGCGcCCUGGu -3'
miRNA:   3'- guCGGU-GCCCGU-CCG--------GGUGCcGGACC- -5'
23665 5' -64.5 NC_005261.1 + 131762 0.66 0.497093
Target:  5'- cCGGCCggcgcgGCGGGCGcGCCgCugGGCCc-- -3'
miRNA:   3'- -GUCGG------UGCCCGUcCGG-GugCCGGacc -5'
23665 5' -64.5 NC_005261.1 + 38339 0.66 0.496177
Target:  5'- -uGCuCugGGGCgcgcacgcccagcGGGCCUuugggGCGGCCgGGa -3'
miRNA:   3'- guCG-GugCCCG-------------UCCGGG-----UGCCGGaCC- -5'
23665 5' -64.5 NC_005261.1 + 87129 0.66 0.495262
Target:  5'- gGGCCGCGGGUAcgcgagcugcucGCCgAUGGCCcgcUGGc -3'
miRNA:   3'- gUCGGUGCCCGUc-----------CGGgUGCCGG---ACC- -5'
23665 5' -64.5 NC_005261.1 + 96201 0.66 0.487966
Target:  5'- -cGCgCACuGGGCGcGCCCGacgauCGGCCUGa -3'
miRNA:   3'- guCG-GUG-CCCGUcCGGGU-----GCCGGACc -5'
23665 5' -64.5 NC_005261.1 + 13039 0.66 0.487966
Target:  5'- gAGCCAgGGcGCGGGgCCGCGcgcgccccuGCCgGGc -3'
miRNA:   3'- gUCGGUgCC-CGUCCgGGUGC---------CGGaCC- -5'
23665 5' -64.5 NC_005261.1 + 17538 0.66 0.487966
Target:  5'- uGGCaaacuggGCGGcGCGGGCCCGCcguucggcgguGGCCUugcGGg -3'
miRNA:   3'- gUCGg------UGCC-CGUCCGGGUG-----------CCGGA---CC- -5'
23665 5' -64.5 NC_005261.1 + 103509 0.66 0.487966
Target:  5'- -cGCCGCGgacGGCGGcGUCCGCGGCa--- -3'
miRNA:   3'- guCGGUGC---CCGUC-CGGGUGCCGgacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.