Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23666 | 3' | -63.3 | NC_005261.1 | + | 35088 | 0.7 | 0.3301 |
Target: 5'- cGCCCUCGGagCCGCGgugAGCGGcGAg- -3' miRNA: 3'- aCGGGGGCCagGGCGC---UCGCCaCUau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 92101 | 0.71 | 0.295578 |
Target: 5'- cGCCCCC-GUCCCGC-AGCacGUGGUAg -3' miRNA: 3'- aCGGGGGcCAGGGCGcUCGc-CACUAU- -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 51150 | 0.71 | 0.295578 |
Target: 5'- aGCCCCCGGggcCCUGCG-GCGGc---- -3' miRNA: 3'- aCGGGGGCCa--GGGCGCuCGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 137865 | 0.71 | 0.28902 |
Target: 5'- cGCCCCUGGugcUCCCGgGgccAGCGGUGc-- -3' miRNA: 3'- aCGGGGGCC---AGGGCgC---UCGCCACuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 182 | 0.71 | 0.28902 |
Target: 5'- cGCCCCUGGugcUCCCGgGgccAGCGGUGc-- -3' miRNA: 3'- aCGGGGGCC---AGGGCgC---UCGCCACuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 99904 | 0.72 | 0.246296 |
Target: 5'- cGCCaCCCGG-CCCGCGAGCGc----- -3' miRNA: 3'- aCGG-GGGCCaGGGCGCUCGCcacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 72439 | 0.72 | 0.257941 |
Target: 5'- uUGCCCCCGGcgggggcgCCCGCGGcgagcGCGGcGAg- -3' miRNA: 3'- -ACGGGGGCCa-------GGGCGCU-----CGCCaCUau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 93662 | 0.74 | 0.172336 |
Target: 5'- cGCCCaCCGGU-CCGCGGGCGGcGGc- -3' miRNA: 3'- aCGGG-GGCCAgGGCGCUCGCCaCUau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 52655 | 0.75 | 0.160151 |
Target: 5'- cGCCCCCGGcCCCGCgcgcacuucGAGCGGg---- -3' miRNA: 3'- aCGGGGGCCaGGGCG---------CUCGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 137901 | 0.78 | 0.09957 |
Target: 5'- cGCCCCUGGUgcucgcgggcCCCGCGAGCGGg---- -3' miRNA: 3'- aCGGGGGCCA----------GGGCGCUCGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 218 | 0.78 | 0.09957 |
Target: 5'- cGCCCCUGGUgcucgcgggcCCCGCGAGCGGg---- -3' miRNA: 3'- aCGGGGGCCA----------GGGCGCUCGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 37053 | 1.06 | 0.000888 |
Target: 5'- cUGCCCCCGGUCCCGCGAGCGGUGAUAg -3' miRNA: 3'- -ACGGGGGCCAGGGCGCUCGCCACUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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