miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23666 3' -63.3 NC_005261.1 + 58545 0.67 0.456778
Target:  5'- cGCCgCCCGGgcUCcugcgccgucguggCCGCGAGCGGcGAg- -3'
miRNA:   3'- aCGG-GGGCC--AG--------------GGCGCUCGCCaCUau -5'
23666 3' -63.3 NC_005261.1 + 90021 0.68 0.44181
Target:  5'- cUGCgCCUGG-CCCGgGAGCGGg---- -3'
miRNA:   3'- -ACGgGGGCCaGGGCgCUCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 50618 0.68 0.44181
Target:  5'- cGCCCCgauUGGugcUCCaCGCGGGCGGcggGGUGg -3'
miRNA:   3'- aCGGGG---GCC---AGG-GCGCUCGCCa--CUAU- -5'
23666 3' -63.3 NC_005261.1 + 41538 0.68 0.44181
Target:  5'- aGCCCCggcUGG-CCCGUG-GCGGUGcgGu -3'
miRNA:   3'- aCGGGG---GCCaGGGCGCuCGCCACuaU- -5'
23666 3' -63.3 NC_005261.1 + 137783 0.68 0.44181
Target:  5'- cGCCCCCGGgccccgccgCCCGCGccGGCGccgccccUGGUGc -3'
miRNA:   3'- aCGGGGGCCa--------GGGCGC--UCGCc------ACUAU- -5'
23666 3' -63.3 NC_005261.1 + 100 0.68 0.44181
Target:  5'- cGCCCCCGGgccccgccgCCCGCGccGGCGccgccccUGGUGc -3'
miRNA:   3'- aCGGGGGCCa--------GGGCGC--UCGCc------ACUAU- -5'
23666 3' -63.3 NC_005261.1 + 134868 0.68 0.436593
Target:  5'- cGCCCgCGccCCCGCGGGCcccugcugugcguucGGUGGUGg -3'
miRNA:   3'- aCGGGgGCcaGGGCGCUCG---------------CCACUAU- -5'
23666 3' -63.3 NC_005261.1 + 51743 0.68 0.433135
Target:  5'- gGCCCCCGGgcugCCGCuGGCcGUGAa- -3'
miRNA:   3'- aCGGGGGCCag--GGCGcUCGcCACUau -5'
23666 3' -63.3 NC_005261.1 + 12740 0.68 0.433135
Target:  5'- gGCCCCCuGGgcgggCCCgGCGAggucguaggcgGCGGUGGc- -3'
miRNA:   3'- aCGGGGG-CCa----GGG-CGCU-----------CGCCACUau -5'
23666 3' -63.3 NC_005261.1 + 33691 0.68 0.431412
Target:  5'- -cCCCCCGGggucgcgcggggCCCGCugcacgagGGGCGGUGGg- -3'
miRNA:   3'- acGGGGGCCa-----------GGGCG--------CUCGCCACUau -5'
23666 3' -63.3 NC_005261.1 + 2408 0.68 0.424561
Target:  5'- cGCCCgCGGgcCCCGCGcGGCGGcGGg- -3'
miRNA:   3'- aCGGGgGCCa-GGGCGC-UCGCCaCUau -5'
23666 3' -63.3 NC_005261.1 + 72725 0.68 0.416089
Target:  5'- cGCCgCCCcGUCCgCGCGGGCGGc---- -3'
miRNA:   3'- aCGG-GGGcCAGG-GCGCUCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 128797 0.68 0.407721
Target:  5'- gGCgCCCGGgCCCGCG-GCGGg---- -3'
miRNA:   3'- aCGgGGGCCaGGGCGCuCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 55953 0.68 0.407721
Target:  5'- gGCuCCCCGGcgccgggucUCCCGCGAGCGc----- -3'
miRNA:   3'- aCG-GGGGCC---------AGGGCGCUCGCcacuau -5'
23666 3' -63.3 NC_005261.1 + 74384 0.69 0.399459
Target:  5'- cGCCCCCGuccccaucccaGUCCCcguuuucggccGCGGGCGG-GAg- -3'
miRNA:   3'- aCGGGGGC-----------CAGGG-----------CGCUCGCCaCUau -5'
23666 3' -63.3 NC_005261.1 + 15145 0.69 0.383261
Target:  5'- cGCCCCCGccgUCCGCGguGGgGGUGGg- -3'
miRNA:   3'- aCGGGGGCca-GGGCGC--UCgCCACUau -5'
23666 3' -63.3 NC_005261.1 + 129301 0.69 0.352199
Target:  5'- cGCCCCCGGcgcCCCGCGccuGCGcUGGc- -3'
miRNA:   3'- aCGGGGGCCa--GGGCGCu--CGCcACUau -5'
23666 3' -63.3 NC_005261.1 + 35088 0.7 0.3301
Target:  5'- cGCCCUCGGagCCGCGgugAGCGGcGAg- -3'
miRNA:   3'- aCGGGGGCCagGGCGC---UCGCCaCUau -5'
23666 3' -63.3 NC_005261.1 + 109862 0.7 0.3301
Target:  5'- gGCUCCUGGgggcagcggggCCCGCGGGCGGg---- -3'
miRNA:   3'- aCGGGGGCCa----------GGGCGCUCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 138083 0.7 0.30904
Target:  5'- cGgUCCUGGUCCCGCGAcGgGGUGc-- -3'
miRNA:   3'- aCgGGGGCCAGGGCGCU-CgCCACuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.