miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23666 3' -63.3 NC_005261.1 + 100 0.68 0.44181
Target:  5'- cGCCCCCGGgccccgccgCCCGCGccGGCGccgccccUGGUGc -3'
miRNA:   3'- aCGGGGGCCa--------GGGCGC--UCGCc------ACUAU- -5'
23666 3' -63.3 NC_005261.1 + 182 0.71 0.28902
Target:  5'- cGCCCCUGGugcUCCCGgGgccAGCGGUGc-- -3'
miRNA:   3'- aCGGGGGCC---AGGGCgC---UCGCCACuau -5'
23666 3' -63.3 NC_005261.1 + 218 0.78 0.09957
Target:  5'- cGCCCCUGGUgcucgcgggcCCCGCGAGCGGg---- -3'
miRNA:   3'- aCGGGGGCCA----------GGGCGCUCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 412 0.7 0.30904
Target:  5'- cGgUCCUGGUCCCGCGAcGgGGUGc-- -3'
miRNA:   3'- aCgGGGGCCAGGGCGCU-CgCCACuau -5'
23666 3' -63.3 NC_005261.1 + 2408 0.68 0.424561
Target:  5'- cGCCCgCGGgcCCCGCGcGGCGGcGGg- -3'
miRNA:   3'- aCGGGgGCCa-GGGCGC-UCGCCaCUau -5'
23666 3' -63.3 NC_005261.1 + 6067 0.66 0.537219
Target:  5'- gGCCCCUcGUCCCgacgGCGgcggcaagcaacgguGGCGGUGGa- -3'
miRNA:   3'- aCGGGGGcCAGGG----CGC---------------UCGCCACUau -5'
23666 3' -63.3 NC_005261.1 + 12740 0.68 0.433135
Target:  5'- gGCCCCCuGGgcgggCCCgGCGAggucguaggcgGCGGUGGc- -3'
miRNA:   3'- aCGGGGG-CCa----GGG-CGCU-----------CGCCACUau -5'
23666 3' -63.3 NC_005261.1 + 15145 0.69 0.383261
Target:  5'- cGCCCCCGccgUCCGCGguGGgGGUGGg- -3'
miRNA:   3'- aCGGGGGCca-GGGCGC--UCgCCACUau -5'
23666 3' -63.3 NC_005261.1 + 26652 0.66 0.552582
Target:  5'- cUGCCCCUGGgccacacgCCCG-GAcGCGGagGGUAc -3'
miRNA:   3'- -ACGGGGGCCa-------GGGCgCU-CGCCa-CUAU- -5'
23666 3' -63.3 NC_005261.1 + 27283 0.67 0.459448
Target:  5'- gGCCCCCGGaccgccCUCGCGAGCaGGccgGGc- -3'
miRNA:   3'- aCGGGGGCCa-----GGGCGCUCG-CCa--CUau -5'
23666 3' -63.3 NC_005261.1 + 29900 0.66 0.571966
Target:  5'- gGCCCgCGGcagCgCGCGAGCGGcUGc-- -3'
miRNA:   3'- aCGGGgGCCa--GgGCGCUCGCC-ACuau -5'
23666 3' -63.3 NC_005261.1 + 30120 0.67 0.486586
Target:  5'- cUGCUuggCgCGG-CCCGCGAcGCGGUGGa- -3'
miRNA:   3'- -ACGG---GgGCCaGGGCGCU-CGCCACUau -5'
23666 3' -63.3 NC_005261.1 + 31042 0.67 0.495801
Target:  5'- cGCCgCCgGGUCCCcaGCGcGGCGG-GAg- -3'
miRNA:   3'- aCGG-GGgCCAGGG--CGC-UCGCCaCUau -5'
23666 3' -63.3 NC_005261.1 + 31976 0.67 0.505094
Target:  5'- cGCgCCUGGgCCCGCGcaccGCGGUGc-- -3'
miRNA:   3'- aCGgGGGCCaGGGCGCu---CGCCACuau -5'
23666 3' -63.3 NC_005261.1 + 33691 0.68 0.431412
Target:  5'- -cCCCCCGGggucgcgcggggCCCGCugcacgagGGGCGGUGGg- -3'
miRNA:   3'- acGGGGGCCa-----------GGGCG--------CUCGCCACUau -5'
23666 3' -63.3 NC_005261.1 + 34733 0.66 0.562252
Target:  5'- cGCCCCCuGGcggCCGCGGGgUGGUGu-- -3'
miRNA:   3'- aCGGGGG-CCag-GGCGCUC-GCCACuau -5'
23666 3' -63.3 NC_005261.1 + 35088 0.7 0.3301
Target:  5'- cGCCCUCGGagCCGCGgugAGCGGcGAg- -3'
miRNA:   3'- aCGGGGGCCagGGCGC---UCGCCaCUau -5'
23666 3' -63.3 NC_005261.1 + 37053 1.06 0.000888
Target:  5'- cUGCCCCCGGUCCCGCGAGCGGUGAUAg -3'
miRNA:   3'- -ACGGGGGCCAGGGCGCUCGCCACUAU- -5'
23666 3' -63.3 NC_005261.1 + 37586 0.67 0.504161
Target:  5'- cGCCCCgguaccacacggcCGGUCCCuGC-AGCuccGGUGAUGg -3'
miRNA:   3'- aCGGGG-------------GCCAGGG-CGcUCG---CCACUAU- -5'
23666 3' -63.3 NC_005261.1 + 41538 0.68 0.44181
Target:  5'- aGCCCCggcUGG-CCCGUG-GCGGUGcgGu -3'
miRNA:   3'- aCGGGG---GCCaGGGCGCuCGCCACuaU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.