miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23666 3' -63.3 NC_005261.1 + 48691 0.66 0.562252
Target:  5'- gGCCCgCGGgccaucacgCCgGCGGGC-GUGAUGu -3'
miRNA:   3'- aCGGGgGCCa--------GGgCGCUCGcCACUAU- -5'
23666 3' -63.3 NC_005261.1 + 48763 0.67 0.477454
Target:  5'- cGcCCCCCGGgcggCCCGaCGAGCucGGcGAUc -3'
miRNA:   3'- aC-GGGGGCCa---GGGC-GCUCG--CCaCUAu -5'
23666 3' -63.3 NC_005261.1 + 50574 0.66 0.562252
Target:  5'- cGCgCCUGGcgucCgCCGCGAGCGGgGAg- -3'
miRNA:   3'- aCGgGGGCCa---G-GGCGCUCGCCaCUau -5'
23666 3' -63.3 NC_005261.1 + 50618 0.68 0.44181
Target:  5'- cGCCCCgauUGGugcUCCaCGCGGGCGGcggGGUGg -3'
miRNA:   3'- aCGGGG---GCC---AGG-GCGCUCGCCa--CUAU- -5'
23666 3' -63.3 NC_005261.1 + 51150 0.71 0.295578
Target:  5'- aGCCCCCGGggcCCUGCG-GCGGc---- -3'
miRNA:   3'- aCGGGGGCCa--GGGCGCuCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 51743 0.68 0.433135
Target:  5'- gGCCCCCGGgcugCCGCuGGCcGUGAa- -3'
miRNA:   3'- aCGGGGGCCag--GGCGcUCGcCACUau -5'
23666 3' -63.3 NC_005261.1 + 52655 0.75 0.160151
Target:  5'- cGCCCCCGGcCCCGCgcgcacuucGAGCGGg---- -3'
miRNA:   3'- aCGGGGGCCaGGGCG---------CUCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 53699 0.67 0.468406
Target:  5'- aGCCCCCGGgcgCCgCGCGccGCGGc---- -3'
miRNA:   3'- aCGGGGGCCa--GG-GCGCu-CGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 55576 0.66 0.571966
Target:  5'- cGCCCCCGcagUCCGCG-GCGGc---- -3'
miRNA:   3'- aCGGGGGCca-GGGCGCuCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 55953 0.68 0.407721
Target:  5'- gGCuCCCCGGcgccgggucUCCCGCGAGCGc----- -3'
miRNA:   3'- aCG-GGGGCC---------AGGGCGCUCGCcacuau -5'
23666 3' -63.3 NC_005261.1 + 58545 0.67 0.456778
Target:  5'- cGCCgCCCGGgcUCcugcgccgucguggCCGCGAGCGGcGAg- -3'
miRNA:   3'- aCGG-GGGCC--AG--------------GGCGCUCGCCaCUau -5'
23666 3' -63.3 NC_005261.1 + 64505 0.67 0.505094
Target:  5'- gGUgCUCGGggCCCGCGGGCGGc---- -3'
miRNA:   3'- aCGgGGGCCa-GGGCGCUCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 66457 0.66 0.52106
Target:  5'- cGCCgCCGGUCCCGCcaggcgcgcguccucGCGGUa--- -3'
miRNA:   3'- aCGGgGGCCAGGGCGcu-------------CGCCAcuau -5'
23666 3' -63.3 NC_005261.1 + 72439 0.72 0.257941
Target:  5'- uUGCCCCCGGcgggggcgCCCGCGGcgagcGCGGcGAg- -3'
miRNA:   3'- -ACGGGGGCCa-------GGGCGCU-----CGCCaCUau -5'
23666 3' -63.3 NC_005261.1 + 72725 0.68 0.416089
Target:  5'- cGCCgCCCcGUCCgCGCGGGCGGc---- -3'
miRNA:   3'- aCGG-GGGcCAGG-GCGCUCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 74384 0.69 0.399459
Target:  5'- cGCCCCCGuccccaucccaGUCCCcguuuucggccGCGGGCGG-GAg- -3'
miRNA:   3'- aCGGGGGC-----------CAGGG-----------CGCUCGCCaCUau -5'
23666 3' -63.3 NC_005261.1 + 74442 0.66 0.542963
Target:  5'- cGCCCCC---CCgGCGGGgGGUGGg- -3'
miRNA:   3'- aCGGGGGccaGGgCGCUCgCCACUau -5'
23666 3' -63.3 NC_005261.1 + 86892 0.66 0.562252
Target:  5'- cGCgCCCUGGUCCgCGCGcggcGCGGa---- -3'
miRNA:   3'- aCG-GGGGCCAGG-GCGCu---CGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 90021 0.68 0.44181
Target:  5'- cUGCgCCUGG-CCCGgGAGCGGg---- -3'
miRNA:   3'- -ACGgGGGCCaGGGCgCUCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 92101 0.71 0.295578
Target:  5'- cGCCCCC-GUCCCGC-AGCacGUGGUAg -3'
miRNA:   3'- aCGGGGGcCAGGGCGcUCGc-CACUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.