miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23666 3' -63.3 NC_005261.1 + 138083 0.7 0.30904
Target:  5'- cGgUCCUGGUCCCGCGAcGgGGUGc-- -3'
miRNA:   3'- aCgGGGGCCAGGGCGCU-CgCCACuau -5'
23666 3' -63.3 NC_005261.1 + 137901 0.78 0.09957
Target:  5'- cGCCCCUGGUgcucgcgggcCCCGCGAGCGGg---- -3'
miRNA:   3'- aCGGGGGCCA----------GGGCGCUCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 137865 0.71 0.28902
Target:  5'- cGCCCCUGGugcUCCCGgGgccAGCGGUGc-- -3'
miRNA:   3'- aCGGGGGCC---AGGGCgC---UCGCCACuau -5'
23666 3' -63.3 NC_005261.1 + 137783 0.68 0.44181
Target:  5'- cGCCCCCGGgccccgccgCCCGCGccGGCGccgccccUGGUGc -3'
miRNA:   3'- aCGGGGGCCa--------GGGCGC--UCGCc------ACUAU- -5'
23666 3' -63.3 NC_005261.1 + 134868 0.68 0.436593
Target:  5'- cGCCCgCGccCCCGCGGGCcccugcugugcguucGGUGGUGg -3'
miRNA:   3'- aCGGGgGCcaGGGCGCUCG---------------CCACUAU- -5'
23666 3' -63.3 NC_005261.1 + 129301 0.69 0.352199
Target:  5'- cGCCCCCGGcgcCCCGCGccuGCGcUGGc- -3'
miRNA:   3'- aCGGGGGCCa--GGGCGCu--CGCcACUau -5'
23666 3' -63.3 NC_005261.1 + 128797 0.68 0.407721
Target:  5'- gGCgCCCGGgCCCGCG-GCGGg---- -3'
miRNA:   3'- aCGgGGGCCaGGGCGCuCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 118877 0.66 0.552582
Target:  5'- cUGgCCUCGGcCaCCGCGGGCGcGcUGGUGg -3'
miRNA:   3'- -ACgGGGGCCaG-GGCGCUCGC-C-ACUAU- -5'
23666 3' -63.3 NC_005261.1 + 111653 0.67 0.486586
Target:  5'- cGCCuCCCaGcccUCCCGCGccGCGGUGGc- -3'
miRNA:   3'- aCGG-GGGcC---AGGGCGCu-CGCCACUau -5'
23666 3' -63.3 NC_005261.1 + 109862 0.7 0.3301
Target:  5'- gGCUCCUGGgggcagcggggCCCGCGGGCGGg---- -3'
miRNA:   3'- aCGGGGGCCa----------GGGCGCUCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 99904 0.72 0.246296
Target:  5'- cGCCaCCCGG-CCCGCGAGCGc----- -3'
miRNA:   3'- aCGG-GGGCCaGGGCGCUCGCcacuau -5'
23666 3' -63.3 NC_005261.1 + 93662 0.74 0.172336
Target:  5'- cGCCCaCCGGU-CCGCGGGCGGcGGc- -3'
miRNA:   3'- aCGGG-GGCCAgGGCGCUCGCCaCUau -5'
23666 3' -63.3 NC_005261.1 + 92101 0.71 0.295578
Target:  5'- cGCCCCC-GUCCCGC-AGCacGUGGUAg -3'
miRNA:   3'- aCGGGGGcCAGGGCGcUCGc-CACUAU- -5'
23666 3' -63.3 NC_005261.1 + 90021 0.68 0.44181
Target:  5'- cUGCgCCUGG-CCCGgGAGCGGg---- -3'
miRNA:   3'- -ACGgGGGCCaGGGCgCUCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 86892 0.66 0.562252
Target:  5'- cGCgCCCUGGUCCgCGCGcggcGCGGa---- -3'
miRNA:   3'- aCG-GGGGCCAGG-GCGCu---CGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 74442 0.66 0.542963
Target:  5'- cGCCCCC---CCgGCGGGgGGUGGg- -3'
miRNA:   3'- aCGGGGGccaGGgCGCUCgCCACUau -5'
23666 3' -63.3 NC_005261.1 + 74384 0.69 0.399459
Target:  5'- cGCCCCCGuccccaucccaGUCCCcguuuucggccGCGGGCGG-GAg- -3'
miRNA:   3'- aCGGGGGC-----------CAGGG-----------CGCUCGCCaCUau -5'
23666 3' -63.3 NC_005261.1 + 72725 0.68 0.416089
Target:  5'- cGCCgCCCcGUCCgCGCGGGCGGc---- -3'
miRNA:   3'- aCGG-GGGcCAGG-GCGCUCGCCacuau -5'
23666 3' -63.3 NC_005261.1 + 72439 0.72 0.257941
Target:  5'- uUGCCCCCGGcgggggcgCCCGCGGcgagcGCGGcGAg- -3'
miRNA:   3'- -ACGGGGGCCa-------GGGCGCU-----CGCCaCUau -5'
23666 3' -63.3 NC_005261.1 + 66457 0.66 0.52106
Target:  5'- cGCCgCCGGUCCCGCcaggcgcgcguccucGCGGUa--- -3'
miRNA:   3'- aCGGgGGCCAGGGCGcu-------------CGCCAcuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.