Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23666 | 3' | -63.3 | NC_005261.1 | + | 64505 | 0.67 | 0.505094 |
Target: 5'- gGUgCUCGGggCCCGCGGGCGGc---- -3' miRNA: 3'- aCGgGGGCCa-GGGCGCUCGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 58545 | 0.67 | 0.456778 |
Target: 5'- cGCCgCCCGGgcUCcugcgccgucguggCCGCGAGCGGcGAg- -3' miRNA: 3'- aCGG-GGGCC--AG--------------GGCGCUCGCCaCUau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 55953 | 0.68 | 0.407721 |
Target: 5'- gGCuCCCCGGcgccgggucUCCCGCGAGCGc----- -3' miRNA: 3'- aCG-GGGGCC---------AGGGCGCUCGCcacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 55576 | 0.66 | 0.571966 |
Target: 5'- cGCCCCCGcagUCCGCG-GCGGc---- -3' miRNA: 3'- aCGGGGGCca-GGGCGCuCGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 53699 | 0.67 | 0.468406 |
Target: 5'- aGCCCCCGGgcgCCgCGCGccGCGGc---- -3' miRNA: 3'- aCGGGGGCCa--GG-GCGCu-CGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 52655 | 0.75 | 0.160151 |
Target: 5'- cGCCCCCGGcCCCGCgcgcacuucGAGCGGg---- -3' miRNA: 3'- aCGGGGGCCaGGGCG---------CUCGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 51743 | 0.68 | 0.433135 |
Target: 5'- gGCCCCCGGgcugCCGCuGGCcGUGAa- -3' miRNA: 3'- aCGGGGGCCag--GGCGcUCGcCACUau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 51150 | 0.71 | 0.295578 |
Target: 5'- aGCCCCCGGggcCCUGCG-GCGGc---- -3' miRNA: 3'- aCGGGGGCCa--GGGCGCuCGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 50618 | 0.68 | 0.44181 |
Target: 5'- cGCCCCgauUGGugcUCCaCGCGGGCGGcggGGUGg -3' miRNA: 3'- aCGGGG---GCC---AGG-GCGCUCGCCa--CUAU- -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 50574 | 0.66 | 0.562252 |
Target: 5'- cGCgCCUGGcgucCgCCGCGAGCGGgGAg- -3' miRNA: 3'- aCGgGGGCCa---G-GGCGCUCGCCaCUau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 48763 | 0.67 | 0.477454 |
Target: 5'- cGcCCCCCGGgcggCCCGaCGAGCucGGcGAUc -3' miRNA: 3'- aC-GGGGGCCa---GGGC-GCUCG--CCaCUAu -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 48691 | 0.66 | 0.562252 |
Target: 5'- gGCCCgCGGgccaucacgCCgGCGGGC-GUGAUGu -3' miRNA: 3'- aCGGGgGCCa--------GGgCGCUCGcCACUAU- -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 41538 | 0.68 | 0.44181 |
Target: 5'- aGCCCCggcUGG-CCCGUG-GCGGUGcgGu -3' miRNA: 3'- aCGGGG---GCCaGGGCGCuCGCCACuaU- -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 37586 | 0.67 | 0.504161 |
Target: 5'- cGCCCCgguaccacacggcCGGUCCCuGC-AGCuccGGUGAUGg -3' miRNA: 3'- aCGGGG-------------GCCAGGG-CGcUCG---CCACUAU- -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 37053 | 1.06 | 0.000888 |
Target: 5'- cUGCCCCCGGUCCCGCGAGCGGUGAUAg -3' miRNA: 3'- -ACGGGGGCCAGGGCGCUCGCCACUAU- -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 35088 | 0.7 | 0.3301 |
Target: 5'- cGCCCUCGGagCCGCGgugAGCGGcGAg- -3' miRNA: 3'- aCGGGGGCCagGGCGC---UCGCCaCUau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 34733 | 0.66 | 0.562252 |
Target: 5'- cGCCCCCuGGcggCCGCGGGgUGGUGu-- -3' miRNA: 3'- aCGGGGG-CCag-GGCGCUC-GCCACuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 33691 | 0.68 | 0.431412 |
Target: 5'- -cCCCCCGGggucgcgcggggCCCGCugcacgagGGGCGGUGGg- -3' miRNA: 3'- acGGGGGCCa-----------GGGCG--------CUCGCCACUau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 31976 | 0.67 | 0.505094 |
Target: 5'- cGCgCCUGGgCCCGCGcaccGCGGUGc-- -3' miRNA: 3'- aCGgGGGCCaGGGCGCu---CGCCACuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 31042 | 0.67 | 0.495801 |
Target: 5'- cGCCgCCgGGUCCCcaGCGcGGCGG-GAg- -3' miRNA: 3'- aCGG-GGgCCAGGG--CGC-UCGCCaCUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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