Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23666 | 3' | -63.3 | NC_005261.1 | + | 55576 | 0.66 | 0.571966 |
Target: 5'- cGCCCCCGcagUCCGCG-GCGGc---- -3' miRNA: 3'- aCGGGGGCca-GGGCGCuCGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 138083 | 0.7 | 0.30904 |
Target: 5'- cGgUCCUGGUCCCGCGAcGgGGUGc-- -3' miRNA: 3'- aCgGGGGCCAGGGCGCU-CgCCACuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 109862 | 0.7 | 0.3301 |
Target: 5'- gGCUCCUGGgggcagcggggCCCGCGGGCGGg---- -3' miRNA: 3'- aCGGGGGCCa----------GGGCGCUCGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 35088 | 0.7 | 0.3301 |
Target: 5'- cGCCCUCGGagCCGCGgugAGCGGcGAg- -3' miRNA: 3'- aCGGGGGCCagGGCGC---UCGCCaCUau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 129301 | 0.69 | 0.352199 |
Target: 5'- cGCCCCCGGcgcCCCGCGccuGCGcUGGc- -3' miRNA: 3'- aCGGGGGCCa--GGGCGCu--CGCcACUau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 15145 | 0.69 | 0.383261 |
Target: 5'- cGCCCCCGccgUCCGCGguGGgGGUGGg- -3' miRNA: 3'- aCGGGGGCca-GGGCGC--UCgCCACUau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 74384 | 0.69 | 0.399459 |
Target: 5'- cGCCCCCGuccccaucccaGUCCCcguuuucggccGCGGGCGG-GAg- -3' miRNA: 3'- aCGGGGGC-----------CAGGG-----------CGCUCGCCaCUau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 55953 | 0.68 | 0.407721 |
Target: 5'- gGCuCCCCGGcgccgggucUCCCGCGAGCGc----- -3' miRNA: 3'- aCG-GGGGCC---------AGGGCGCUCGCcacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 128797 | 0.68 | 0.407721 |
Target: 5'- gGCgCCCGGgCCCGCG-GCGGg---- -3' miRNA: 3'- aCGgGGGCCaGGGCGCuCGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 412 | 0.7 | 0.30904 |
Target: 5'- cGgUCCUGGUCCCGCGAcGgGGUGc-- -3' miRNA: 3'- aCgGGGGCCAGGGCGCU-CgCCACuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 92101 | 0.71 | 0.295578 |
Target: 5'- cGCCCCC-GUCCCGC-AGCacGUGGUAg -3' miRNA: 3'- aCGGGGGcCAGGGCGcUCGc-CACUAU- -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 51150 | 0.71 | 0.295578 |
Target: 5'- aGCCCCCGGggcCCUGCG-GCGGc---- -3' miRNA: 3'- aCGGGGGCCa--GGGCGCuCGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 218 | 0.78 | 0.09957 |
Target: 5'- cGCCCCUGGUgcucgcgggcCCCGCGAGCGGg---- -3' miRNA: 3'- aCGGGGGCCA----------GGGCGCUCGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 137901 | 0.78 | 0.09957 |
Target: 5'- cGCCCCUGGUgcucgcgggcCCCGCGAGCGGg---- -3' miRNA: 3'- aCGGGGGCCA----------GGGCGCUCGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 52655 | 0.75 | 0.160151 |
Target: 5'- cGCCCCCGGcCCCGCgcgcacuucGAGCGGg---- -3' miRNA: 3'- aCGGGGGCCaGGGCG---------CUCGCCacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 93662 | 0.74 | 0.172336 |
Target: 5'- cGCCCaCCGGU-CCGCGGGCGGcGGc- -3' miRNA: 3'- aCGGG-GGCCAgGGCGCUCGCCaCUau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 99904 | 0.72 | 0.246296 |
Target: 5'- cGCCaCCCGG-CCCGCGAGCGc----- -3' miRNA: 3'- aCGG-GGGCCaGGGCGCUCGCcacuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 72439 | 0.72 | 0.257941 |
Target: 5'- uUGCCCCCGGcgggggcgCCCGCGGcgagcGCGGcGAg- -3' miRNA: 3'- -ACGGGGGCCa-------GGGCGCU-----CGCCaCUau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 182 | 0.71 | 0.28902 |
Target: 5'- cGCCCCUGGugcUCCCGgGgccAGCGGUGc-- -3' miRNA: 3'- aCGGGGGCC---AGGGCgC---UCGCCACuau -5' |
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23666 | 3' | -63.3 | NC_005261.1 | + | 137865 | 0.71 | 0.28902 |
Target: 5'- cGCCCCUGGugcUCCCGgGgccAGCGGUGc-- -3' miRNA: 3'- aCGGGGGCC---AGGGCgC---UCGCCACuau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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