miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23666 5' -51.9 NC_005261.1 + 23189 0.66 0.985174
Target:  5'- ----gACAgcgagCGCGcCGCGGGgcccgcagcggcggCCGCGCg -3'
miRNA:   3'- auauaUGUa----GCGU-GCGCUCa-------------GGCGCG- -5'
23666 5' -51.9 NC_005261.1 + 48908 0.66 0.98444
Target:  5'- ----gGCcUCuaGCGCGAGcCCGgGCg -3'
miRNA:   3'- auauaUGuAGcgUGCGCUCaGGCgCG- -5'
23666 5' -51.9 NC_005261.1 + 52563 0.66 0.98444
Target:  5'- ----aGCGacUCGCGCGCGAGcUCGcCGUc -3'
miRNA:   3'- auauaUGU--AGCGUGCGCUCaGGC-GCG- -5'
23666 5' -51.9 NC_005261.1 + 3896 0.66 0.98444
Target:  5'- ----gGCGagCGCgGCGCGGGcgcCCGCGCc -3'
miRNA:   3'- auauaUGUa-GCG-UGCGCUCa--GGCGCG- -5'
23666 5' -51.9 NC_005261.1 + 50047 0.66 0.98444
Target:  5'- --gGUGCAgcgcCGC-CGCGAGaagcccgcugCCGCGUa -3'
miRNA:   3'- auaUAUGUa---GCGuGCGCUCa---------GGCGCG- -5'
23666 5' -51.9 NC_005261.1 + 136898 0.66 0.98444
Target:  5'- aGUGUAC-UgGCGuggUGUGGG-CCGCGCg -3'
miRNA:   3'- aUAUAUGuAgCGU---GCGCUCaGGCGCG- -5'
23666 5' -51.9 NC_005261.1 + 119036 0.66 0.98444
Target:  5'- ----gACGUCGCcgacgguaACGCGcccgcGG-CCGCGCg -3'
miRNA:   3'- auauaUGUAGCG--------UGCGC-----UCaGGCGCG- -5'
23666 5' -51.9 NC_005261.1 + 65102 0.66 0.98444
Target:  5'- ----gGCggCGCAgCGCGAGU-UGCGCc -3'
miRNA:   3'- auauaUGuaGCGU-GCGCUCAgGCGCG- -5'
23666 5' -51.9 NC_005261.1 + 74684 0.66 0.98444
Target:  5'- ----cGCGacCGCGCGgGAGcuggccgCCGCGCg -3'
miRNA:   3'- auauaUGUa-GCGUGCgCUCa------GGCGCG- -5'
23666 5' -51.9 NC_005261.1 + 48042 0.66 0.98444
Target:  5'- ----aGCA-CGCGCGCGcGGUCgGgGCc -3'
miRNA:   3'- auauaUGUaGCGUGCGC-UCAGgCgCG- -5'
23666 5' -51.9 NC_005261.1 + 66771 0.66 0.98444
Target:  5'- gGUGUGgccCGUCGCGCGCGA-UCaUGgGCu -3'
miRNA:   3'- aUAUAU---GUAGCGUGCGCUcAG-GCgCG- -5'
23666 5' -51.9 NC_005261.1 + 12069 0.66 0.98444
Target:  5'- --gGUGCG--GCA-GCGGcGUCCGCGCc -3'
miRNA:   3'- auaUAUGUagCGUgCGCU-CAGGCGCG- -5'
23666 5' -51.9 NC_005261.1 + 126790 0.66 0.98444
Target:  5'- cGUcUGCGUCuGCcgagagcaGCGCGGcGUCUGCGUa -3'
miRNA:   3'- aUAuAUGUAG-CG--------UGCGCU-CAGGCGCG- -5'
23666 5' -51.9 NC_005261.1 + 133642 0.66 0.98444
Target:  5'- ----cGCcgCGCcgcuGCGCGAGcgCUGCGUg -3'
miRNA:   3'- auauaUGuaGCG----UGCGCUCa-GGCGCG- -5'
23666 5' -51.9 NC_005261.1 + 4565 0.66 0.98444
Target:  5'- ---cUGgAUcCGCGgGCGGGUCCG-GCg -3'
miRNA:   3'- auauAUgUA-GCGUgCGCUCAGGCgCG- -5'
23666 5' -51.9 NC_005261.1 + 133259 0.66 0.98444
Target:  5'- ----cGCAggcgGCGCGCGAGUaCCaggGCGCc -3'
miRNA:   3'- auauaUGUag--CGUGCGCUCA-GG---CGCG- -5'
23666 5' -51.9 NC_005261.1 + 43714 0.66 0.98444
Target:  5'- ----cACG-CGCuGCGCGAG-CaCGCGCg -3'
miRNA:   3'- auauaUGUaGCG-UGCGCUCaG-GCGCG- -5'
23666 5' -51.9 NC_005261.1 + 136475 0.66 0.983872
Target:  5'- ----gAC-UCGCGCGCGGGcagcagcgagcagcUCgGCGCc -3'
miRNA:   3'- auauaUGuAGCGUGCGCUC--------------AGgCGCG- -5'
23666 5' -51.9 NC_005261.1 + 98270 0.66 0.982688
Target:  5'- ----gGCggCGCGCGCGuucgacgcccggcgcGUCCGCGg -3'
miRNA:   3'- auauaUGuaGCGUGCGCu--------------CAGGCGCg -5'
23666 5' -51.9 NC_005261.1 + 60339 0.66 0.982485
Target:  5'- gGUGUuuGCggCGC-CGCG-G-CCGCGCg -3'
miRNA:   3'- aUAUA--UGuaGCGuGCGCuCaGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.