miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 3' -58.7 NC_005261.1 + 70971 0.66 0.727472
Target:  5'- -cGACgGCgaagaagaGCGCGUgGCGCGcGGGCg -3'
miRNA:   3'- caUUGaCGag------CGCGUA-CGCGC-CCCGa -5'
23667 3' -58.7 NC_005261.1 + 38208 0.66 0.741207
Target:  5'- cGUGcuGCUGCUcaacaccucgcucacCGUGCGga-GCGGGGCg -3'
miRNA:   3'- -CAU--UGACGA---------------GCGCGUacgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 74901 0.66 0.71756
Target:  5'- -cGGCgGCcCGCGCuggccGCGCGGGGg- -3'
miRNA:   3'- caUUGaCGaGCGCGua---CGCGCCCCga -5'
23667 3' -58.7 NC_005261.1 + 30236 0.66 0.750905
Target:  5'- cGUGGCcccGCUgGCGCGguacucgacgcgcgGCGCGGcGGCc -3'
miRNA:   3'- -CAUUGa--CGAgCGCGUa-------------CGCGCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 82575 0.67 0.677274
Target:  5'- -cAGCaGCUCGCGCAgcgcguccucguUGCGCugguccGGGCg -3'
miRNA:   3'- caUUGaCGAGCGCGU------------ACGCGc-----CCCGa -5'
23667 3' -58.7 NC_005261.1 + 135680 0.67 0.656872
Target:  5'- -gAGgaGCUCuGCGCc-GCGCGGcGGCUa -3'
miRNA:   3'- caUUgaCGAG-CGCGuaCGCGCC-CCGA- -5'
23667 3' -58.7 NC_005261.1 + 128097 0.67 0.656872
Target:  5'- uUAACggGCgagCgGCGCG-GCGCGGGGUc -3'
miRNA:   3'- cAUUGa-CGa--G-CGCGUaCGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 93907 0.67 0.656872
Target:  5'- -cGACUGCggGCGCG-GCGCccgcGGGCUu -3'
miRNA:   3'- caUUGACGagCGCGUaCGCGc---CCCGA- -5'
23667 3' -58.7 NC_005261.1 + 127819 0.67 0.711578
Target:  5'- -gGGCcGCUCGCGCucGCGgccgcgagcagcggaCGGGGCg -3'
miRNA:   3'- caUUGaCGAGCGCGuaCGC---------------GCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 107360 0.67 0.707576
Target:  5'- ---cCUGCgUCGuCGUggGCGcCGGGGCg -3'
miRNA:   3'- cauuGACG-AGC-GCGuaCGC-GCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 86197 0.67 0.667087
Target:  5'- -gAGCggGCUcCGCGUcgGCGCgccgaaccGGGGCa -3'
miRNA:   3'- caUUGa-CGA-GCGCGuaCGCG--------CCCCGa -5'
23667 3' -58.7 NC_005261.1 + 134180 0.67 0.667087
Target:  5'- --cGCUGCUUGCGgAgggccugGCGCGGcucGGCg -3'
miRNA:   3'- cauUGACGAGCGCgUa------CGCGCC---CCGa -5'
23667 3' -58.7 NC_005261.1 + 137750 0.67 0.667087
Target:  5'- -aAAUcgGCgCGCGCGggggcgggGUGCGGGGCg -3'
miRNA:   3'- caUUGa-CGaGCGCGUa-------CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 37001 0.67 0.677274
Target:  5'- -----aGCcCGCGgGcUGCGCGGGGCc -3'
miRNA:   3'- cauugaCGaGCGCgU-ACGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 105113 0.67 0.667087
Target:  5'- -gGGCuUGCcCGCGCggGCGCGGGccGCc -3'
miRNA:   3'- caUUG-ACGaGCGCGuaCGCGCCC--CGa -5'
23667 3' -58.7 NC_005261.1 + 62689 0.67 0.697527
Target:  5'- -cAGCUGCaCGCGCcgGCGCaGcGuGGCg -3'
miRNA:   3'- caUUGACGaGCGCGuaCGCG-C-C-CCGa -5'
23667 3' -58.7 NC_005261.1 + 62885 0.67 0.697527
Target:  5'- cGgcGCaGCcCGCGCGaggcgGgGCGGGGCg -3'
miRNA:   3'- -CauUGaCGaGCGCGUa----CgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 32372 0.67 0.667087
Target:  5'- -aGAC-GCUgGUGCAggcgcgGCGCGGcGGCg -3'
miRNA:   3'- caUUGaCGAgCGCGUa-----CGCGCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 74941 0.67 0.707576
Target:  5'- -gGACUGCg-GCGCggGCGCGcucGGCg -3'
miRNA:   3'- caUUGACGagCGCGuaCGCGCc--CCGa -5'
23667 3' -58.7 NC_005261.1 + 101237 0.67 0.707576
Target:  5'- gGUGGCgccucaGCUCGCGCAgcgcgucgaUGCGCuccgcaaaGGGCUc -3'
miRNA:   3'- -CAUUGa-----CGAGCGCGU---------ACGCGc-------CCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.