miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 3' -58.7 NC_005261.1 + 72775 0.67 0.707576
Target:  5'- -cGGCgGC-CGCGCAcGCGUccGGGGCc -3'
miRNA:   3'- caUUGaCGaGCGCGUaCGCG--CCCCGa -5'
23667 3' -58.7 NC_005261.1 + 107360 0.67 0.707576
Target:  5'- ---cCUGCgUCGuCGUggGCGcCGGGGCg -3'
miRNA:   3'- cauuGACG-AGC-GCGuaCGC-GCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 127819 0.67 0.711578
Target:  5'- -gGGCcGCUCGCGCucGCGgccgcgagcagcggaCGGGGCg -3'
miRNA:   3'- caUUGaCGAGCGCGuaCGC---------------GCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 28622 0.67 0.707576
Target:  5'- -gAGCUGUg-GCGCAUGguggcCGCGGGGg- -3'
miRNA:   3'- caUUGACGagCGCGUAC-----GCGCCCCga -5'
23667 3' -58.7 NC_005261.1 + 67113 0.67 0.707576
Target:  5'- -gGGCgGCgCGCGCA-GUGCGGcGGCc -3'
miRNA:   3'- caUUGaCGaGCGCGUaCGCGCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 11464 0.67 0.707576
Target:  5'- -aAGCggaGCggGCGCGgagGgGCGGGGCg -3'
miRNA:   3'- caUUGa--CGagCGCGUa--CgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 133356 0.67 0.704568
Target:  5'- --cGCUGC-CGCGCAgggcuucggcugccUGCGCGcGGCc -3'
miRNA:   3'- cauUGACGaGCGCGU--------------ACGCGCcCCGa -5'
23667 3' -58.7 NC_005261.1 + 108897 0.67 0.697527
Target:  5'- --cGCUGCcCGCcggcgaGCGggGCGCGGGGUc -3'
miRNA:   3'- cauUGACGaGCG------CGUa-CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 62689 0.67 0.697527
Target:  5'- -cAGCUGCaCGCGCcgGCGCaGcGuGGCg -3'
miRNA:   3'- caUUGACGaGCGCGuaCGCG-C-C-CCGa -5'
23667 3' -58.7 NC_005261.1 + 62885 0.67 0.697527
Target:  5'- cGgcGCaGCcCGCGCGaggcgGgGCGGGGCg -3'
miRNA:   3'- -CauUGaCGaGCGCGUa----CgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 14443 0.67 0.687424
Target:  5'- -cGGCUcGCUCGCGgG-GCGCGcGGCg -3'
miRNA:   3'- caUUGA-CGAGCGCgUaCGCGCcCCGa -5'
23667 3' -58.7 NC_005261.1 + 74941 0.67 0.707576
Target:  5'- -gGACUGCg-GCGCggGCGCGcucGGCg -3'
miRNA:   3'- caUUGACGagCGCGuaCGCGCc--CCGa -5'
23667 3' -58.7 NC_005261.1 + 54145 0.68 0.595449
Target:  5'- --cGCcGCaCGCGgcCGUGCGCGGGGUUg -3'
miRNA:   3'- cauUGaCGaGCGC--GUACGCGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 130471 0.68 0.626141
Target:  5'- -gAGCgGCUCGCgGCGUGCcuCGGcGGCg -3'
miRNA:   3'- caUUGaCGAGCG-CGUACGc-GCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 101775 0.68 0.626141
Target:  5'- -----cGCcuccagCGCGCGUGCcgcccgGCGGGGCUg -3'
miRNA:   3'- cauugaCGa-----GCGCGUACG------CGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 21861 0.68 0.618968
Target:  5'- cUGAC-GCUCGCGCucgcgaacgcgcgccCGCGGGGCc -3'
miRNA:   3'- cAUUGaCGAGCGCGuac------------GCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 112328 0.68 0.615896
Target:  5'- uUGGC--CUCGCGCGacUGCaaGCGGGGCa -3'
miRNA:   3'- cAUUGacGAGCGCGU--ACG--CGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 71065 0.68 0.605663
Target:  5'- -cAGCcGC-CGCGCGgcGgGCGGGGCg -3'
miRNA:   3'- caUUGaCGaGCGCGUa-CgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 3812 0.68 0.60464
Target:  5'- -cAGCcGCUCGCGCGcUGcCGCGGGcccgggcGCUg -3'
miRNA:   3'- caUUGaCGAGCGCGU-AC-GCGCCC-------CGA- -5'
23667 3' -58.7 NC_005261.1 + 125916 0.68 0.60464
Target:  5'- uGUGGCgggGCUCGCcacgcgcacgguaGCcgcugGCGCGGGGUc -3'
miRNA:   3'- -CAUUGa--CGAGCG-------------CGua---CGCGCCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.