Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 37160 | 0.7 | 0.515267 |
Target: 5'- -cAGC-GCUCGCGCGcgcuUGCGCcuGGGCg -3' miRNA: 3'- caUUGaCGAGCGCGU----ACGCGc-CCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 120646 | 0.7 | 0.505525 |
Target: 5'- uGUGcCUGCg-GCGCAagGCGCGGGcGCg -3' miRNA: 3'- -CAUuGACGagCGCGUa-CGCGCCC-CGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 66607 | 0.7 | 0.505525 |
Target: 5'- -gAGCUGCUggauggCGCGCGUGCGCauGGCc -3' miRNA: 3'- caUUGACGA------GCGCGUACGCGccCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 134425 | 0.7 | 0.505525 |
Target: 5'- --uGCUGCUCcaCGC-UGCucGCGGGGCUg -3' miRNA: 3'- cauUGACGAGc-GCGuACG--CGCCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 100725 | 0.7 | 0.495862 |
Target: 5'- -cGGCcGCgccgCGCGCGcGCGCGGcGGCg -3' miRNA: 3'- caUUGaCGa---GCGCGUaCGCGCC-CCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 105284 | 0.69 | 0.585263 |
Target: 5'- -cAGCgccgGCgagcccgggCGCGCGaGCGCGGGGUc -3' miRNA: 3'- caUUGa---CGa--------GCGCGUaCGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 37217 | 0.69 | 0.584246 |
Target: 5'- uGUGGCUcccgcggGCUUGCGCG-GCGCGGcGCg -3' miRNA: 3'- -CAUUGA-------CGAGCGCGUaCGCGCCcCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 4494 | 0.69 | 0.579167 |
Target: 5'- cGUAGcCUGCgcgggccccagucgCGCGCccGCGCGGGcGCc -3' miRNA: 3'- -CAUU-GACGa-------------GCGCGuaCGCGCCC-CGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 50915 | 0.69 | 0.575111 |
Target: 5'- cGgcGCcGcCUCGC-CggGCGCGGGGCUc -3' miRNA: 3'- -CauUGaC-GAGCGcGuaCGCGCCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 44258 | 0.69 | 0.575111 |
Target: 5'- -cGACgccGCggCGCGCGgggGgGCGGGGCc -3' miRNA: 3'- caUUGa--CGa-GCGCGUa--CgCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 32058 | 0.69 | 0.575111 |
Target: 5'- -gGACaugGC-CGCGCAgagcgcgGCGCuGGGGCUc -3' miRNA: 3'- caUUGa--CGaGCGCGUa------CGCG-CCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 135644 | 0.69 | 0.575111 |
Target: 5'- --cGCUGCUaccUGCGCggGCGCGGgcGGCc -3' miRNA: 3'- cauUGACGA---GCGCGuaCGCGCC--CCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 63009 | 0.69 | 0.575111 |
Target: 5'- -cGGCgGC-CGCGCccGCGCGGGcGCc -3' miRNA: 3'- caUUGaCGaGCGCGuaCGCGCCC-CGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 115922 | 0.69 | 0.564999 |
Target: 5'- -cGGCcGC-CGCGUccgcGCGCGGGGCa -3' miRNA: 3'- caUUGaCGaGCGCGua--CGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 1271 | 0.69 | 0.564999 |
Target: 5'- gGUGACUGUgccgGCGCccagGCcgGCGGGGCUc -3' miRNA: 3'- -CAUUGACGag--CGCGua--CG--CGCCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 46900 | 0.69 | 0.544923 |
Target: 5'- -cAGCcagGCcCGCGCAcGCacGCGGGGCUg -3' miRNA: 3'- caUUGa--CGaGCGCGUaCG--CGCCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 125916 | 0.68 | 0.60464 |
Target: 5'- uGUGGCgggGCUCGCcacgcgcacgguaGCcgcugGCGCGGGGUc -3' miRNA: 3'- -CAUUGa--CGAGCG-------------CGua---CGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 54145 | 0.68 | 0.595449 |
Target: 5'- --cGCcGCaCGCGgcCGUGCGCGGGGUUg -3' miRNA: 3'- cauUGaCGaGCGC--GUACGCGCCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 111756 | 0.68 | 0.595449 |
Target: 5'- -gGGCaGCUCGUGCAccUGCGCugcgcgcccGGGGUg -3' miRNA: 3'- caUUGaCGAGCGCGU--ACGCG---------CCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 3812 | 0.68 | 0.60464 |
Target: 5'- -cAGCcGCUCGCGCGcUGcCGCGGGcccgggcGCUg -3' miRNA: 3'- caUUGaCGAGCGCGU-AC-GCGCCC-------CGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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