miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 3' -58.7 NC_005261.1 + 82575 0.67 0.677274
Target:  5'- -cAGCaGCUCGCGCAgcgcguccucguUGCGCugguccGGGCg -3'
miRNA:   3'- caUUGaCGAGCGCGU------------ACGCGc-----CCCGa -5'
23667 3' -58.7 NC_005261.1 + 37001 0.67 0.677274
Target:  5'- -----aGCcCGCGgGcUGCGCGGGGCc -3'
miRNA:   3'- cauugaCGaGCGCgU-ACGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 128097 0.67 0.656872
Target:  5'- uUAACggGCgagCgGCGCG-GCGCGGGGUc -3'
miRNA:   3'- cAUUGa-CGa--G-CGCGUaCGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 93907 0.67 0.656872
Target:  5'- -cGACUGCggGCGCG-GCGCccgcGGGCUu -3'
miRNA:   3'- caUUGACGagCGCGUaCGCGc---CCCGA- -5'
23667 3' -58.7 NC_005261.1 + 135680 0.67 0.656872
Target:  5'- -gAGgaGCUCuGCGCc-GCGCGGcGGCUa -3'
miRNA:   3'- caUUgaCGAG-CGCGuaCGCGCC-CCGA- -5'
23667 3' -58.7 NC_005261.1 + 73929 0.67 0.664026
Target:  5'- -cGACUGCgUGUGCcUGCuccggcuugcagacGCGGGGCg -3'
miRNA:   3'- caUUGACGaGCGCGuACG--------------CGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 32372 0.67 0.667087
Target:  5'- -aGAC-GCUgGUGCAggcgcgGCGCGGcGGCg -3'
miRNA:   3'- caUUGaCGAgCGCGUa-----CGCGCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 50103 0.67 0.667087
Target:  5'- --cGCUGCcCGCGCc-GCGCaGGGCc -3'
miRNA:   3'- cauUGACGaGCGCGuaCGCGcCCCGa -5'
23667 3' -58.7 NC_005261.1 + 75063 0.67 0.667087
Target:  5'- uGUAcACcGCgCGCGCcgGCG-GGGGCUc -3'
miRNA:   3'- -CAU-UGaCGaGCGCGuaCGCgCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 86197 0.67 0.667087
Target:  5'- -gAGCggGCUcCGCGUcgGCGCgccgaaccGGGGCa -3'
miRNA:   3'- caUUGa-CGA-GCGCGuaCGCG--------CCCCGa -5'
23667 3' -58.7 NC_005261.1 + 105113 0.67 0.667087
Target:  5'- -gGGCuUGCcCGCGCggGCGCGGGccGCc -3'
miRNA:   3'- caUUG-ACGaGCGCGuaCGCGCCC--CGa -5'
23667 3' -58.7 NC_005261.1 + 134180 0.67 0.667087
Target:  5'- --cGCUGCUUGCGgAgggccugGCGCGGcucGGCg -3'
miRNA:   3'- cauUGACGAGCGCgUa------CGCGCC---CCGa -5'
23667 3' -58.7 NC_005261.1 + 67 0.67 0.667087
Target:  5'- -aAAUcgGCgCGCGCGggggcgggGUGCGGGGCg -3'
miRNA:   3'- caUUGa-CGaGCGCGUa-------CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 90373 0.67 0.667087
Target:  5'- -----cGCUCGUGCGcgGCgaggccccgccgGCGGGGCUg -3'
miRNA:   3'- cauugaCGAGCGCGUa-CG------------CGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 137750 0.67 0.667087
Target:  5'- -aAAUcgGCgCGCGCGggggcgggGUGCGGGGCg -3'
miRNA:   3'- caUUGa-CGaGCGCGUa-------CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 70971 0.66 0.727472
Target:  5'- -cGACgGCgaagaagaGCGCGUgGCGCGcGGGCg -3'
miRNA:   3'- caUUGaCGag------CGCGUA-CGCGC-CCCGa -5'
23667 3' -58.7 NC_005261.1 + 69786 0.66 0.727472
Target:  5'- -gAGCcGCUCcCGCGgcGCGCGGcGGCg -3'
miRNA:   3'- caUUGaCGAGcGCGUa-CGCGCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 74901 0.66 0.71756
Target:  5'- -cGGCgGCcCGCGCuggccGCGCGGGGg- -3'
miRNA:   3'- caUUGaCGaGCGCGua---CGCGCCCCga -5'
23667 3' -58.7 NC_005261.1 + 63730 0.66 0.71756
Target:  5'- -gAGCgGCgUGCGCAUGgcCGCGGcGGCg -3'
miRNA:   3'- caUUGaCGaGCGCGUAC--GCGCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 15492 0.66 0.766199
Target:  5'- --cGCcGCUCGCuGCGg--GCGGGGCg -3'
miRNA:   3'- cauUGaCGAGCG-CGUacgCGCCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.