miRNA display CGI


Results 41 - 60 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 3' -58.7 NC_005261.1 + 67861 0.7 0.525084
Target:  5'- -gAGCUGCUCGCgGCAacucccgggcgGCGCGGGuaaGCg -3'
miRNA:   3'- caUUGACGAGCG-CGUa----------CGCGCCC---CGa -5'
23667 3' -58.7 NC_005261.1 + 68258 0.71 0.458099
Target:  5'- -gGACUGCcuggCGCGCcUGCGCccgcgcggcGGGGCc -3'
miRNA:   3'- caUUGACGa---GCGCGuACGCG---------CCCCGa -5'
23667 3' -58.7 NC_005261.1 + 69278 0.71 0.439801
Target:  5'- -gAGCcGCcCGCGCcgaccccgGCGCGGGGCg -3'
miRNA:   3'- caUUGaCGaGCGCGua------CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 69786 0.66 0.727472
Target:  5'- -gAGCcGCUCcCGCGgcGCGCGGcGGCg -3'
miRNA:   3'- caUUGaCGAGcGCGUa-CGCGCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 70971 0.66 0.727472
Target:  5'- -cGACgGCgaagaagaGCGCGUgGCGCGcGGGCg -3'
miRNA:   3'- caUUGaCGag------CGCGUA-CGCGC-CCCGa -5'
23667 3' -58.7 NC_005261.1 + 71065 0.68 0.605663
Target:  5'- -cAGCcGC-CGCGCGgcGgGCGGGGCg -3'
miRNA:   3'- caUUGaCGaGCGCGUa-CgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 71939 0.77 0.208351
Target:  5'- -aGGCUGC-CGCGCGccccacuggcgucgGCGCGGGGCg -3'
miRNA:   3'- caUUGACGaGCGCGUa-------------CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 72775 0.67 0.707576
Target:  5'- -cGGCgGC-CGCGCAcGCGUccGGGGCc -3'
miRNA:   3'- caUUGaCGaGCGCGUaCGCG--CCCCGa -5'
23667 3' -58.7 NC_005261.1 + 72955 0.66 0.727472
Target:  5'- cGgcACcgGCUCGCGCccGCcgccGCGGGGg- -3'
miRNA:   3'- -CauUGa-CGAGCGCGuaCG----CGCCCCga -5'
23667 3' -58.7 NC_005261.1 + 73929 0.67 0.664026
Target:  5'- -cGACUGCgUGUGCcUGCuccggcuugcagacGCGGGGCg -3'
miRNA:   3'- caUUGACGaGCGCGuACG--------------CGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 74901 0.66 0.71756
Target:  5'- -cGGCgGCcCGCGCuggccGCGCGGGGg- -3'
miRNA:   3'- caUUGaCGaGCGCGua---CGCGCCCCga -5'
23667 3' -58.7 NC_005261.1 + 74941 0.67 0.707576
Target:  5'- -gGACUGCg-GCGCggGCGCGcucGGCg -3'
miRNA:   3'- caUUGACGagCGCGuaCGCGCc--CCGa -5'
23667 3' -58.7 NC_005261.1 + 75063 0.67 0.667087
Target:  5'- uGUAcACcGCgCGCGCcgGCG-GGGGCUc -3'
miRNA:   3'- -CAU-UGaCGaGCGCGuaCGCgCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 75478 0.66 0.756674
Target:  5'- -gGGCgGCg-GCGCGggccgcuacgaGCGCGGGGCg -3'
miRNA:   3'- caUUGaCGagCGCGUa----------CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 77668 0.66 0.747038
Target:  5'- ---cCUGCagGCGCAggGCGCGgacgggccGGGCUa -3'
miRNA:   3'- cauuGACGagCGCGUa-CGCGC--------CCCGA- -5'
23667 3' -58.7 NC_005261.1 + 80059 0.66 0.766199
Target:  5'- cUGGCgGCggGCGCGggggGCGUGGGGg- -3'
miRNA:   3'- cAUUGaCGagCGCGUa---CGCGCCCCga -5'
23667 3' -58.7 NC_005261.1 + 82575 0.67 0.677274
Target:  5'- -cAGCaGCUCGCGCAgcgcguccucguUGCGCugguccGGGCg -3'
miRNA:   3'- caUUGaCGAGCGCGU------------ACGCGc-----CCCGa -5'
23667 3' -58.7 NC_005261.1 + 86197 0.67 0.667087
Target:  5'- -gAGCggGCUcCGCGUcgGCGCgccgaaccGGGGCa -3'
miRNA:   3'- caUUGa-CGA-GCGCGuaCGCG--------CCCCGa -5'
23667 3' -58.7 NC_005261.1 + 90373 0.67 0.667087
Target:  5'- -----cGCUCGUGCGcgGCgaggccccgccgGCGGGGCUg -3'
miRNA:   3'- cauugaCGAGCGCGUa-CG------------CGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 92600 0.71 0.43081
Target:  5'- -cAGCcGCUCgcgGCGCGUGC-CGGGGCc -3'
miRNA:   3'- caUUGaCGAG---CGCGUACGcGCCCCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.