miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 3' -58.7 NC_005261.1 + 93907 0.67 0.656872
Target:  5'- -cGACUGCggGCGCG-GCGCccgcGGGCUu -3'
miRNA:   3'- caUUGACGagCGCGUaCGCGc---CCCGA- -5'
23667 3' -58.7 NC_005261.1 + 95537 0.66 0.766199
Target:  5'- -gAGCUGCUucgUGCGCAUGCcGCGcGuGCa -3'
miRNA:   3'- caUUGACGA---GCGCGUACG-CGCcC-CGa -5'
23667 3' -58.7 NC_005261.1 + 95797 0.71 0.476795
Target:  5'- --cGCUGCUagccgGCGCcgGCG-GGGGCUc -3'
miRNA:   3'- cauUGACGAg----CGCGuaCGCgCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 100725 0.7 0.495862
Target:  5'- -cGGCcGCgccgCGCGCGcGCGCGGcGGCg -3'
miRNA:   3'- caUUGaCGa---GCGCGUaCGCGCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 101237 0.67 0.707576
Target:  5'- gGUGGCgccucaGCUCGCGCAgcgcgucgaUGCGCuccgcaaaGGGCUc -3'
miRNA:   3'- -CAUUGa-----CGAGCGCGU---------ACGCGc-------CCCGA- -5'
23667 3' -58.7 NC_005261.1 + 101775 0.68 0.626141
Target:  5'- -----cGCcuccagCGCGCGUGCcgcccgGCGGGGCUg -3'
miRNA:   3'- cauugaCGa-----GCGCGUACG------CGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 105113 0.67 0.667087
Target:  5'- -gGGCuUGCcCGCGCggGCGCGGGccGCc -3'
miRNA:   3'- caUUG-ACGaGCGCGuaCGCGCCC--CGa -5'
23667 3' -58.7 NC_005261.1 + 105284 0.69 0.585263
Target:  5'- -cAGCgccgGCgagcccgggCGCGCGaGCGCGGGGUc -3'
miRNA:   3'- caUUGa---CGa--------GCGCGUaCGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 107360 0.67 0.707576
Target:  5'- ---cCUGCgUCGuCGUggGCGcCGGGGCg -3'
miRNA:   3'- cauuGACG-AGC-GCGuaCGC-GCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 108897 0.67 0.697527
Target:  5'- --cGCUGCcCGCcggcgaGCGggGCGCGGGGUc -3'
miRNA:   3'- cauUGACGaGCG------CGUa-CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 109238 0.7 0.525084
Target:  5'- --cGCUGCa-GCGCGgcccaGUGCGGGGCc -3'
miRNA:   3'- cauUGACGagCGCGUa----CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 111756 0.68 0.595449
Target:  5'- -gGGCaGCUCGUGCAccUGCGCugcgcgcccGGGGUg -3'
miRNA:   3'- caUUGaCGAGCGCGU--ACGCG---------CCCCGa -5'
23667 3' -58.7 NC_005261.1 + 112328 0.68 0.615896
Target:  5'- uUGGC--CUCGCGCGacUGCaaGCGGGGCa -3'
miRNA:   3'- cAUUGacGAGCGCGU--ACG--CGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 112908 0.74 0.317176
Target:  5'- ---cCUGCcgCGCuGCGUGCGCGaGGGCg -3'
miRNA:   3'- cauuGACGa-GCG-CGUACGCGC-CCCGa -5'
23667 3' -58.7 NC_005261.1 + 113121 0.66 0.737301
Target:  5'- -gGACaUGCUCuCGCccgccGCGCGGcGGCUg -3'
miRNA:   3'- caUUG-ACGAGcGCGua---CGCGCC-CCGA- -5'
23667 3' -58.7 NC_005261.1 + 114253 0.66 0.747038
Target:  5'- -cAGCUGCUgcucuuuaaaaaCGaCGCGguggcGCGCGcGGGCUa -3'
miRNA:   3'- caUUGACGA------------GC-GCGUa----CGCGC-CCCGA- -5'
23667 3' -58.7 NC_005261.1 + 115922 0.69 0.564999
Target:  5'- -cGGCcGC-CGCGUccgcGCGCGGGGCa -3'
miRNA:   3'- caUUGaCGaGCGCGua--CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 118142 0.72 0.375934
Target:  5'- -cGGCcgGCUCGCGCAgacgcuggccgucGCgGCGGGGCUu -3'
miRNA:   3'- caUUGa-CGAGCGCGUa------------CG-CGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 118206 0.79 0.1448
Target:  5'- ---cCUGC-CGCGC-UGCGCGGGGCg -3'
miRNA:   3'- cauuGACGaGCGCGuACGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 120646 0.7 0.505525
Target:  5'- uGUGcCUGCg-GCGCAagGCGCGGGcGCg -3'
miRNA:   3'- -CAUuGACGagCGCGUa-CGCGCCC-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.