miRNA display CGI


Results 81 - 99 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 3' -58.7 NC_005261.1 + 120952 0.72 0.38753
Target:  5'- gGUGGagGCUCGCGCcc-CGCGGGGCg -3'
miRNA:   3'- -CAUUgaCGAGCGCGuacGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 121486 0.66 0.727472
Target:  5'- -cGGCUGC-CGC-CAcgggGCgGCGGGGCg -3'
miRNA:   3'- caUUGACGaGCGcGUa---CG-CGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 123163 0.71 0.467399
Target:  5'- -gGGCgggGCgggCGCGCggGCGUGGuGGCUg -3'
miRNA:   3'- caUUGa--CGa--GCGCGuaCGCGCC-CCGA- -5'
23667 3' -58.7 NC_005261.1 + 123446 0.68 0.646637
Target:  5'- --cGCaGCUCGCGCAUGaCGCcgucgcGGGCc -3'
miRNA:   3'- cauUGaCGAGCGCGUAC-GCGc-----CCCGa -5'
23667 3' -58.7 NC_005261.1 + 125517 0.66 0.746068
Target:  5'- aGUGGCUuuuauacGCUCGCGCcgccCGCaGGGCg -3'
miRNA:   3'- -CAUUGA-------CGAGCGCGuac-GCGcCCCGa -5'
23667 3' -58.7 NC_005261.1 + 125916 0.68 0.60464
Target:  5'- uGUGGCgggGCUCGCcacgcgcacgguaGCcgcugGCGCGGGGUc -3'
miRNA:   3'- -CAUUGa--CGAGCG-------------CGua---CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 127819 0.67 0.711578
Target:  5'- -gGGCcGCUCGCGCucGCGgccgcgagcagcggaCGGGGCg -3'
miRNA:   3'- caUUGaCGAGCGCGuaCGC---------------GCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 128097 0.67 0.656872
Target:  5'- uUAACggGCgagCgGCGCG-GCGCGGGGUc -3'
miRNA:   3'- cAUUGa-CGa--G-CGCGUaCGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 129727 0.66 0.756674
Target:  5'- -cGGCUGCagCG-GCAggGCgGCGGGGCc -3'
miRNA:   3'- caUUGACGa-GCgCGUa-CG-CGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 129979 0.73 0.34721
Target:  5'- -cAAgUG-UCGCGCAUGCGCuGGGCg -3'
miRNA:   3'- caUUgACgAGCGCGUACGCGcCCCGa -5'
23667 3' -58.7 NC_005261.1 + 130471 0.68 0.626141
Target:  5'- -gAGCgGCUCGCgGCGUGCcuCGGcGGCg -3'
miRNA:   3'- caUUGaCGAGCG-CGUACGc-GCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 133317 0.75 0.285108
Target:  5'- cUGGCUGCUCGCGCAgcuccugccggcacGCGCGcGcGGCg -3'
miRNA:   3'- cAUUGACGAGCGCGUa-------------CGCGC-C-CCGa -5'
23667 3' -58.7 NC_005261.1 + 133356 0.67 0.704568
Target:  5'- --cGCUGC-CGCGCAgggcuucggcugccUGCGCGcGGCc -3'
miRNA:   3'- cauUGACGaGCGCGU--------------ACGCGCcCCGa -5'
23667 3' -58.7 NC_005261.1 + 134180 0.67 0.667087
Target:  5'- --cGCUGCUUGCGgAgggccugGCGCGGcucGGCg -3'
miRNA:   3'- cauUGACGAGCGCgUa------CGCGCC---CCGa -5'
23667 3' -58.7 NC_005261.1 + 134336 0.66 0.714572
Target:  5'- --cGCUGCUguaccgcaagccccCGCGCcgccGCGCGGGGg- -3'
miRNA:   3'- cauUGACGA--------------GCGCGua--CGCGCCCCga -5'
23667 3' -58.7 NC_005261.1 + 134425 0.7 0.505525
Target:  5'- --uGCUGCUCcaCGC-UGCucGCGGGGCUg -3'
miRNA:   3'- cauUGACGAGc-GCGuACG--CGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 135644 0.69 0.575111
Target:  5'- --cGCUGCUaccUGCGCggGCGCGGgcGGCc -3'
miRNA:   3'- cauUGACGA---GCGCGuaCGCGCC--CCGa -5'
23667 3' -58.7 NC_005261.1 + 135680 0.67 0.656872
Target:  5'- -gAGgaGCUCuGCGCc-GCGCGGcGGCUa -3'
miRNA:   3'- caUUgaCGAG-CGCGuaCGCGCC-CCGA- -5'
23667 3' -58.7 NC_005261.1 + 137750 0.67 0.667087
Target:  5'- -aAAUcgGCgCGCGCGggggcgggGUGCGGGGCg -3'
miRNA:   3'- caUUGa-CGaGCGCGUa-------CGCGCCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.