Results 61 - 80 of 99 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 66607 | 0.7 | 0.505525 |
Target: 5'- -gAGCUGCUggauggCGCGCGUGCGCauGGCc -3' miRNA: 3'- caUUGACGA------GCGCGUACGCGccCCGa -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 63730 | 0.66 | 0.71756 |
Target: 5'- -gAGCgGCgUGCGCAUGgcCGCGGcGGCg -3' miRNA: 3'- caUUGaCGaGCGCGUAC--GCGCC-CCGa -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 63009 | 0.69 | 0.575111 |
Target: 5'- -cGGCgGC-CGCGCccGCGCGGGcGCc -3' miRNA: 3'- caUUGaCGaGCGCGuaCGCGCCC-CGa -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 62885 | 0.67 | 0.697527 |
Target: 5'- cGgcGCaGCcCGCGCGaggcgGgGCGGGGCg -3' miRNA: 3'- -CauUGaCGaGCGCGUa----CgCGCCCCGa -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 62689 | 0.67 | 0.697527 |
Target: 5'- -cAGCUGCaCGCGCcgGCGCaGcGuGGCg -3' miRNA: 3'- caUUGACGaGCGCGuaCGCG-C-C-CCGa -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 57668 | 0.68 | 0.595449 |
Target: 5'- -aGACUGCgcgaGCGCcaGCcgGCGGGGCa -3' miRNA: 3'- caUUGACGag--CGCGuaCG--CGCCCCGa -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 56115 | 0.66 | 0.747038 |
Target: 5'- -gAGCgGCgggagCGCGCcgcaggGCGgGGGGCg -3' miRNA: 3'- caUUGaCGa----GCGCGua----CGCgCCCCGa -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 55029 | 0.77 | 0.206299 |
Target: 5'- cGUAGCcgccgGCccCGCGCAgcUGCGCGGGGCc -3' miRNA: 3'- -CAUUGa----CGa-GCGCGU--ACGCGCCCCGa -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 54145 | 0.68 | 0.595449 |
Target: 5'- --cGCcGCaCGCGgcCGUGCGCGGGGUUg -3' miRNA: 3'- cauUGaCGaGCGC--GUACGCGCCCCGA- -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 50915 | 0.69 | 0.575111 |
Target: 5'- cGgcGCcGcCUCGC-CggGCGCGGGGCUc -3' miRNA: 3'- -CauUGaC-GAGCGcGuaCGCGCCCCGA- -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 50103 | 0.67 | 0.667087 |
Target: 5'- --cGCUGCcCGCGCc-GCGCaGGGCc -3' miRNA: 3'- cauUGACGaGCGCGuaCGCGcCCCGa -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 46900 | 0.69 | 0.544923 |
Target: 5'- -cAGCcagGCcCGCGCAcGCacGCGGGGCUg -3' miRNA: 3'- caUUGa--CGaGCGCGUaCG--CGCCCCGA- -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 46484 | 0.66 | 0.747038 |
Target: 5'- --uGCaGCUCgGCGCccucCGCGGGGCg -3' miRNA: 3'- cauUGaCGAG-CGCGuac-GCGCCCCGa -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 44258 | 0.69 | 0.575111 |
Target: 5'- -cGACgccGCggCGCGCGgggGgGCGGGGCc -3' miRNA: 3'- caUUGa--CGa-GCGCGUa--CgCGCCCCGa -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 42607 | 0.66 | 0.766199 |
Target: 5'- -aGGCaGCUCGCGCG-GCgcaaaguccaGCGGGGaCUc -3' miRNA: 3'- caUUGaCGAGCGCGUaCG----------CGCCCC-GA- -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 41890 | 0.73 | 0.371037 |
Target: 5'- -cGGCguaCUCGCGCA-GCGUGGGGUUg -3' miRNA: 3'- caUUGac-GAGCGCGUaCGCGCCCCGA- -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 38208 | 0.66 | 0.741207 |
Target: 5'- cGUGcuGCUGCUcaacaccucgcucacCGUGCGga-GCGGGGCg -3' miRNA: 3'- -CAU--UGACGA---------------GCGCGUacgCGCCCCGa -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 37217 | 0.69 | 0.584246 |
Target: 5'- uGUGGCUcccgcggGCUUGCGCG-GCGCGGcGCg -3' miRNA: 3'- -CAUUGA-------CGAGCGCGUaCGCGCCcCGa -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 37160 | 0.7 | 0.515267 |
Target: 5'- -cAGC-GCUCGCGCGcgcuUGCGCcuGGGCg -3' miRNA: 3'- caUUGaCGAGCGCGU----ACGCGc-CCCGa -5' |
|||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 37001 | 0.67 | 0.677274 |
Target: 5'- -----aGCcCGCGgGcUGCGCGGGGCc -3' miRNA: 3'- cauugaCGaGCGCgU-ACGCGCCCCGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home