Results 81 - 99 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 112328 | 0.68 | 0.615896 |
Target: 5'- uUGGC--CUCGCGCGacUGCaaGCGGGGCa -3' miRNA: 3'- cAUUGacGAGCGCGU--ACG--CGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 21861 | 0.68 | 0.618968 |
Target: 5'- cUGAC-GCUCGCGCucgcgaacgcgcgccCGCGGGGCc -3' miRNA: 3'- cAUUGaCGAGCGCGuac------------GCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 101775 | 0.68 | 0.626141 |
Target: 5'- -----cGCcuccagCGCGCGUGCcgcccgGCGGGGCUg -3' miRNA: 3'- cauugaCGa-----GCGCGUACG------CGCCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 130471 | 0.68 | 0.626141 |
Target: 5'- -gAGCgGCUCGCgGCGUGCcuCGGcGGCg -3' miRNA: 3'- caUUGaCGAGCG-CGUACGc-GCC-CCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 123446 | 0.68 | 0.646637 |
Target: 5'- --cGCaGCUCGCGCAUGaCGCcgucgcGGGCc -3' miRNA: 3'- cauUGaCGAGCGCGUAC-GCGc-----CCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 128097 | 0.67 | 0.656872 |
Target: 5'- uUAACggGCgagCgGCGCG-GCGCGGGGUc -3' miRNA: 3'- cAUUGa-CGa--G-CGCGUaCGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 111756 | 0.68 | 0.595449 |
Target: 5'- -gGGCaGCUCGUGCAccUGCGCugcgcgcccGGGGUg -3' miRNA: 3'- caUUGaCGAGCGCGU--ACGCG---------CCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 57668 | 0.68 | 0.595449 |
Target: 5'- -aGACUGCgcgaGCGCcaGCcgGCGGGGCa -3' miRNA: 3'- caUUGACGag--CGCGuaCG--CGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 1271 | 0.69 | 0.564999 |
Target: 5'- gGUGACUGUgccgGCGCccagGCcgGCGGGGCUc -3' miRNA: 3'- -CAUUGACGag--CGCGua--CG--CGCCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 115922 | 0.69 | 0.564999 |
Target: 5'- -cGGCcGC-CGCGUccgcGCGCGGGGCa -3' miRNA: 3'- caUUGaCGaGCGCGua--CGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 63009 | 0.69 | 0.575111 |
Target: 5'- -cGGCgGC-CGCGCccGCGCGGGcGCc -3' miRNA: 3'- caUUGaCGaGCGCGuaCGCGCCC-CGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 135644 | 0.69 | 0.575111 |
Target: 5'- --cGCUGCUaccUGCGCggGCGCGGgcGGCc -3' miRNA: 3'- cauUGACGA---GCGCGuaCGCGCC--CCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 32058 | 0.69 | 0.575111 |
Target: 5'- -gGACaugGC-CGCGCAgagcgcgGCGCuGGGGCUc -3' miRNA: 3'- caUUGa--CGaGCGCGUa------CGCG-CCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 44258 | 0.69 | 0.575111 |
Target: 5'- -cGACgccGCggCGCGCGgggGgGCGGGGCc -3' miRNA: 3'- caUUGa--CGa-GCGCGUa--CgCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 50915 | 0.69 | 0.575111 |
Target: 5'- cGgcGCcGcCUCGC-CggGCGCGGGGCUc -3' miRNA: 3'- -CauUGaC-GAGCGcGuaCGCGCCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 4494 | 0.69 | 0.579167 |
Target: 5'- cGUAGcCUGCgcgggccccagucgCGCGCccGCGCGGGcGCc -3' miRNA: 3'- -CAUU-GACGa-------------GCGCGuaCGCGCCC-CGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 37217 | 0.69 | 0.584246 |
Target: 5'- uGUGGCUcccgcggGCUUGCGCG-GCGCGGcGCg -3' miRNA: 3'- -CAUUGA-------CGAGCGCGUaCGCGCCcCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 105284 | 0.69 | 0.585263 |
Target: 5'- -cAGCgccgGCgagcccgggCGCGCGaGCGCGGGGUc -3' miRNA: 3'- caUUGa---CGa--------GCGCGUaCGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 93907 | 0.67 | 0.656872 |
Target: 5'- -cGACUGCggGCGCG-GCGCccgcGGGCUu -3' miRNA: 3'- caUUGACGagCGCGUaCGCGc---CCCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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