miRNA display CGI


Results 21 - 40 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 3' -58.7 NC_005261.1 + 72955 0.66 0.727472
Target:  5'- cGgcACcgGCUCGCGCccGCcgccGCGGGGg- -3'
miRNA:   3'- -CauUGa-CGAGCGCGuaCG----CGCCCCga -5'
23667 3' -58.7 NC_005261.1 + 74901 0.66 0.71756
Target:  5'- -cGGCgGCcCGCGCuggccGCGCGGGGg- -3'
miRNA:   3'- caUUGaCGaGCGCGua---CGCGCCCCga -5'
23667 3' -58.7 NC_005261.1 + 63730 0.66 0.71756
Target:  5'- -gAGCgGCgUGCGCAUGgcCGCGGcGGCg -3'
miRNA:   3'- caUUGaCGaGCGCGUAC--GCGCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 134336 0.66 0.714572
Target:  5'- --cGCUGCUguaccgcaagccccCGCGCcgccGCGCGGGGg- -3'
miRNA:   3'- cauUGACGA--------------GCGCGua--CGCGCCCCga -5'
23667 3' -58.7 NC_005261.1 + 127819 0.67 0.711578
Target:  5'- -gGGCcGCUCGCGCucGCGgccgcgagcagcggaCGGGGCg -3'
miRNA:   3'- caUUGaCGAGCGCGuaCGC---------------GCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 107360 0.67 0.707576
Target:  5'- ---cCUGCgUCGuCGUggGCGcCGGGGCg -3'
miRNA:   3'- cauuGACG-AGC-GCGuaCGC-GCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 72775 0.67 0.707576
Target:  5'- -cGGCgGC-CGCGCAcGCGUccGGGGCc -3'
miRNA:   3'- caUUGaCGaGCGCGUaCGCG--CCCCGa -5'
23667 3' -58.7 NC_005261.1 + 11464 0.67 0.707576
Target:  5'- -aAGCggaGCggGCGCGgagGgGCGGGGCg -3'
miRNA:   3'- caUUGa--CGagCGCGUa--CgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 101237 0.67 0.707576
Target:  5'- gGUGGCgccucaGCUCGCGCAgcgcgucgaUGCGCuccgcaaaGGGCUc -3'
miRNA:   3'- -CAUUGa-----CGAGCGCGU---------ACGCGc-------CCCGA- -5'
23667 3' -58.7 NC_005261.1 + 74941 0.67 0.707576
Target:  5'- -gGACUGCg-GCGCggGCGCGcucGGCg -3'
miRNA:   3'- caUUGACGagCGCGuaCGCGCc--CCGa -5'
23667 3' -58.7 NC_005261.1 + 67113 0.67 0.707576
Target:  5'- -gGGCgGCgCGCGCA-GUGCGGcGGCc -3'
miRNA:   3'- caUUGaCGaGCGCGUaCGCGCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 28622 0.67 0.707576
Target:  5'- -gAGCUGUg-GCGCAUGguggcCGCGGGGg- -3'
miRNA:   3'- caUUGACGagCGCGUAC-----GCGCCCCga -5'
23667 3' -58.7 NC_005261.1 + 133356 0.67 0.704568
Target:  5'- --cGCUGC-CGCGCAgggcuucggcugccUGCGCGcGGCc -3'
miRNA:   3'- cauUGACGaGCGCGU--------------ACGCGCcCCGa -5'
23667 3' -58.7 NC_005261.1 + 108897 0.67 0.697527
Target:  5'- --cGCUGCcCGCcggcgaGCGggGCGCGGGGUc -3'
miRNA:   3'- cauUGACGaGCG------CGUa-CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 62885 0.67 0.697527
Target:  5'- cGgcGCaGCcCGCGCGaggcgGgGCGGGGCg -3'
miRNA:   3'- -CauUGaCGaGCGCGUa----CgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 62689 0.67 0.697527
Target:  5'- -cAGCUGCaCGCGCcgGCGCaGcGuGGCg -3'
miRNA:   3'- caUUGACGaGCGCGuaCGCG-C-C-CCGa -5'
23667 3' -58.7 NC_005261.1 + 14443 0.67 0.687424
Target:  5'- -cGGCUcGCUCGCGgG-GCGCGcGGCg -3'
miRNA:   3'- caUUGA-CGAGCGCgUaCGCGCcCCGa -5'
23667 3' -58.7 NC_005261.1 + 82575 0.67 0.677274
Target:  5'- -cAGCaGCUCGCGCAgcgcguccucguUGCGCugguccGGGCg -3'
miRNA:   3'- caUUGaCGAGCGCGU------------ACGCGc-----CCCGa -5'
23667 3' -58.7 NC_005261.1 + 37001 0.67 0.677274
Target:  5'- -----aGCcCGCGgGcUGCGCGGGGCc -3'
miRNA:   3'- cauugaCGaGCGCgU-ACGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 75063 0.67 0.667087
Target:  5'- uGUAcACcGCgCGCGCcgGCG-GGGGCUc -3'
miRNA:   3'- -CAU-UGaCGaGCGCGuaCGCgCCCCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.