miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 5' -45.3 NC_005261.1 + 32549 0.75 0.93697
Target:  5'- cGCGGCGCGggccgGCGCGC---GUGGAAGu -3'
miRNA:   3'- -CGUCGCGUa----CGCGCGaauUAUUUUUg -5'
23667 5' -45.3 NC_005261.1 + 33602 0.68 0.999503
Target:  5'- gGCGGCGCcgGCGCGg----------- -3'
miRNA:   3'- -CGUCGCGuaCGCGCgaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 33888 0.68 0.99936
Target:  5'- cCGGCGCGUcaccgggGCGCGCguau--AAAGCg -3'
miRNA:   3'- cGUCGCGUA-------CGCGCGaauuauUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 34038 0.7 0.997253
Target:  5'- cGCGGCGC--GCGCGCUgcccugccuGCa -3'
miRNA:   3'- -CGUCGCGuaCGCGCGAauuauuuu-UG- -5'
23667 5' -45.3 NC_005261.1 + 34374 0.67 0.999761
Target:  5'- cGCGGCGCc-GCGCGCa---------- -3'
miRNA:   3'- -CGUCGCGuaCGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 34680 0.67 0.999893
Target:  5'- gGCAGCGCGcUGCGUGac-GGUGGGc-- -3'
miRNA:   3'- -CGUCGCGU-ACGCGCgaaUUAUUUuug -5'
23667 5' -45.3 NC_005261.1 + 35150 0.68 0.999375
Target:  5'- cGCGGCGCAaGCacGCGCaUGcgGAcccGAGCg -3'
miRNA:   3'- -CGUCGCGUaCG--CGCGaAUuaUU---UUUG- -5'
23667 5' -45.3 NC_005261.1 + 35465 0.68 0.999375
Target:  5'- cGCGGCGCGcGCGCGUc---------- -3'
miRNA:   3'- -CGUCGCGUaCGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 36187 1.14 0.013605
Target:  5'- gGCAGCGCAUGCGCGCUUAAUAAAAACu -3'
miRNA:   3'- -CGUCGCGUACGCGCGAAUUAUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 36636 0.66 0.999983
Target:  5'- aCGGCGCGaagccgGCGCGCgggcuuGGGGCc -3'
miRNA:   3'- cGUCGCGUa-----CGCGCGaauuauUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 36968 0.67 0.999816
Target:  5'- cGCGGCGCAgagcucggUGCGgGCUccagccGGAGCc -3'
miRNA:   3'- -CGUCGCGU--------ACGCgCGAauuau-UUUUG- -5'
23667 5' -45.3 NC_005261.1 + 37159 0.72 0.985693
Target:  5'- cCAGCGCucgcGCGCGCUUGcgccuGGGCg -3'
miRNA:   3'- cGUCGCGua--CGCGCGAAUuauu-UUUG- -5'
23667 5' -45.3 NC_005261.1 + 37236 0.71 0.992484
Target:  5'- cGCGGCGCG-GCGCGUggacagcgcGGAGACc -3'
miRNA:   3'- -CGUCGCGUaCGCGCGaauua----UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 38548 0.73 0.979462
Target:  5'- aCAGCGCcgGCGCGCggccaugcGGCg -3'
miRNA:   3'- cGUCGCGuaCGCGCGaauuauuuUUG- -5'
23667 5' -45.3 NC_005261.1 + 38955 0.66 0.999956
Target:  5'- cGCGGCGCGcggGCuGCGCagcAAcAAGAGCc -3'
miRNA:   3'- -CGUCGCGUa--CG-CGCGaa-UUaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 39988 0.69 0.998804
Target:  5'- cGCGcCGCcgGCGUGC---GUGAAGGCg -3'
miRNA:   3'- -CGUcGCGuaCGCGCGaauUAUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 43025 0.68 0.999503
Target:  5'- aCAGCGCc-GUGCGCUgcacGGAGACc -3'
miRNA:   3'- cGUCGCGuaCGCGCGAauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 43776 0.66 0.999956
Target:  5'- cGUGGgGCG-GCGCGCg----GAGGGCg -3'
miRNA:   3'- -CGUCgCGUaCGCGCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 43811 0.66 0.999983
Target:  5'- -gGGCGCcggGCGCGCccuccGUGGAGAa -3'
miRNA:   3'- cgUCGCGua-CGCGCGaau--UAUUUUUg -5'
23667 5' -45.3 NC_005261.1 + 44737 0.66 0.999983
Target:  5'- uGCAGCugggccccgaGC-UGCGCGCgacccGGGAGCg -3'
miRNA:   3'- -CGUCG----------CGuACGCGCGaauuaUUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.