miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 5' -45.3 NC_005261.1 + 122634 0.67 0.999816
Target:  5'- gGCgAGCGCGaggcccgGCGCGCguacgUGGgcgcgAAGAGCa -3'
miRNA:   3'- -CG-UCGCGUa------CGCGCGa----AUUa----UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 120931 0.67 0.999816
Target:  5'- cGCgAGCGCcgG-GCGCgggaaGGUGGAGGCu -3'
miRNA:   3'- -CG-UCGCGuaCgCGCGaa---UUAUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 120652 0.69 0.998534
Target:  5'- uGCGGCGCAaggcgcggGCGCGCcu-GUGAucucGCg -3'
miRNA:   3'- -CGUCGCGUa-------CGCGCGaauUAUUuu--UG- -5'
23667 5' -45.3 NC_005261.1 + 119250 0.71 0.995536
Target:  5'- cGCGGCcaucuucGCAUGCGCGCUc--------- -3'
miRNA:   3'- -CGUCG-------CGUACGCGCGAauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 118847 0.68 0.999693
Target:  5'- uGCGGCGCGgagggcgGCGCGCc---------- -3'
miRNA:   3'- -CGUCGCGUa------CGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 118640 0.69 0.998728
Target:  5'- gGCGGCGCucugggccccgggccGCGCGCUcgGGgcUGAGGGCg -3'
miRNA:   3'- -CGUCGCGua-------------CGCGCGAa-UU--AUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 118574 0.66 0.999964
Target:  5'- cGCGcGCGCGgcgGCGCGCgccgccgccgcGGAGCu -3'
miRNA:   3'- -CGU-CGCGUa--CGCGCGaauuau-----UUUUG- -5'
23667 5' -45.3 NC_005261.1 + 118371 0.67 0.999816
Target:  5'- -gGGCGCugggGCGCGCggccc-GAGGCg -3'
miRNA:   3'- cgUCGCGua--CGCGCGaauuauUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 118266 0.67 0.99992
Target:  5'- cCGGUGCAcUGCGCGCacUUcGUGAcgGCc -3'
miRNA:   3'- cGUCGCGU-ACGCGCG--AAuUAUUuuUG- -5'
23667 5' -45.3 NC_005261.1 + 117939 0.72 0.985693
Target:  5'- uGCGGCcCGUGCGCGCUcgcUGcUAcgGGCg -3'
miRNA:   3'- -CGUCGcGUACGCGCGA---AUuAUuuUUG- -5'
23667 5' -45.3 NC_005261.1 + 116539 0.68 0.9997
Target:  5'- cGCuccGCGCccGCGCGCgucauacaaggGAAAGCg -3'
miRNA:   3'- -CGu--CGCGuaCGCGCGaauua------UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 116486 0.76 0.93148
Target:  5'- gGCGGgGCggGCGCGCgguAUAAAGAg -3'
miRNA:   3'- -CGUCgCGuaCGCGCGaauUAUUUUUg -5'
23667 5' -45.3 NC_005261.1 + 114279 0.7 0.997839
Target:  5'- gGUGGCGCGcGCGgGCUacgugGAGGACg -3'
miRNA:   3'- -CGUCGCGUaCGCgCGAauua-UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 113477 0.69 0.998648
Target:  5'- uGCuGCGCccgaaccugccgcugAUGCGCGCgcugcGAAAGCa -3'
miRNA:   3'- -CGuCGCG---------------UACGCGCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 112910 0.66 0.999968
Target:  5'- uGCcGCGC-UGCGUGCgcgAGggcGAGGGCg -3'
miRNA:   3'- -CGuCGCGuACGCGCGaa-UUa--UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 112347 0.69 0.99903
Target:  5'- aGCGGgGCAUcauggGCGCGCU-----GAAGCu -3'
miRNA:   3'- -CGUCgCGUA-----CGCGCGAauuauUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 111846 0.73 0.973828
Target:  5'- cGgAGCGCGUGCGCGCc---------- -3'
miRNA:   3'- -CgUCGCGUACGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 110531 0.66 0.999983
Target:  5'- cGgGGCGCAggaggGCGCGCg---------- -3'
miRNA:   3'- -CgUCGCGUa----CGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 110336 0.67 0.999859
Target:  5'- cGCGGaCGCGcUGCGCGCg---------- -3'
miRNA:   3'- -CGUC-GCGU-ACGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 109467 0.72 0.9905
Target:  5'- cGCuucGCGCGUGCGCGCcc-----GAGCg -3'
miRNA:   3'- -CGu--CGCGUACGCGCGaauuauuUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.