miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 5' -45.3 NC_005261.1 + 59953 0.77 0.884974
Target:  5'- cGCAGCGCG-GCGCGCgugaacgGGUcgaaGAAGGCg -3'
miRNA:   3'- -CGUCGCGUaCGCGCGaa-----UUA----UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 105592 0.77 0.877207
Target:  5'- cGgGGCGCGUGCGCGCgac----GAACg -3'
miRNA:   3'- -CgUCGCGUACGCGCGaauuauuUUUG- -5'
23667 5' -45.3 NC_005261.1 + 31795 0.78 0.860884
Target:  5'- cGCGGCGCAgugcgccGCGCGCUggccu-GAGCg -3'
miRNA:   3'- -CGUCGCGUa------CGCGCGAauuauuUUUG- -5'
23667 5' -45.3 NC_005261.1 + 53872 0.79 0.806184
Target:  5'- cGCGGCGC--GCGCGCUgucgAGUcGAAGCg -3'
miRNA:   3'- -CGUCGCGuaCGCGCGAa---UUAuUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 50997 0.8 0.776104
Target:  5'- gGCGGCGCGUGgGCGCggc--GGGAGCu -3'
miRNA:   3'- -CGUCGCGUACgCGCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 32549 0.75 0.93697
Target:  5'- cGCGGCGCGggccgGCGCGC---GUGGAAGu -3'
miRNA:   3'- -CGUCGCGUa----CGCGCGaauUAUUUUUg -5'
23667 5' -45.3 NC_005261.1 + 74159 0.75 0.94564
Target:  5'- aGCGGgGCAUGCGCGUgcucaagguGACg -3'
miRNA:   3'- -CGUCgCGUACGCGCGaauuauuu-UUG- -5'
23667 5' -45.3 NC_005261.1 + 105375 0.73 0.979216
Target:  5'- gGCGGCGCgcgcggGUGCGCGCUg--------- -3'
miRNA:   3'- -CGUCGCG------UACGCGCGAauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 70476 0.73 0.979216
Target:  5'- cGCcGCGgGUGCGCGCgc-GUGAGcACg -3'
miRNA:   3'- -CGuCGCgUACGCGCGaauUAUUUuUG- -5'
23667 5' -45.3 NC_005261.1 + 57797 0.73 0.976636
Target:  5'- cGCGGCGg--GCGCGCgaaggccGUGAAGGCg -3'
miRNA:   3'- -CGUCGCguaCGCGCGaau----UAUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 101098 0.73 0.976093
Target:  5'- uGCAGCGCGgccGCGCGCgccuu---GGCg -3'
miRNA:   3'- -CGUCGCGUa--CGCGCGaauuauuuUUG- -5'
23667 5' -45.3 NC_005261.1 + 133834 0.73 0.973828
Target:  5'- cGCGGcCGCGUGCGCGCc---------- -3'
miRNA:   3'- -CGUC-GCGUACGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 111846 0.73 0.973828
Target:  5'- cGgAGCGCGUGCGCGCc---------- -3'
miRNA:   3'- -CgUCGCGUACGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 99021 0.74 0.970783
Target:  5'- gGCGGCGCGgcgGCGCGCg---------- -3'
miRNA:   3'- -CGUCGCGUa--CGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 62204 0.74 0.970783
Target:  5'- uGCAGCGCGagggUGCGCGCg---------- -3'
miRNA:   3'- -CGUCGCGU----ACGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 58733 0.74 0.967492
Target:  5'- cGCcGCGCAgaGCGCGCUguuaAGAAACu -3'
miRNA:   3'- -CGuCGCGUa-CGCGCGAauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 95784 0.74 0.966105
Target:  5'- cGCuGCGCcgGCGCGCUgcuagccGGCg -3'
miRNA:   3'- -CGuCGCGuaCGCGCGAauuauuuUUG- -5'
23667 5' -45.3 NC_005261.1 + 53113 0.74 0.963206
Target:  5'- cGCGGCGC-UGCGCGCcgccaacAGGGCg -3'
miRNA:   3'- -CGUCGCGuACGCGCGaauuau-UUUUG- -5'
23667 5' -45.3 NC_005261.1 + 81985 0.75 0.956064
Target:  5'- gGCuGCGCgaaguuGUGCGCGCUgccgucgAAGAGCg -3'
miRNA:   3'- -CGuCGCG------UACGCGCGAauua---UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 83498 0.75 0.951714
Target:  5'- -gAGCGCcagGCGCGCgcgccGGUGGAAGCg -3'
miRNA:   3'- cgUCGCGua-CGCGCGaa---UUAUUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.