miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 5' -45.3 NC_005261.1 + 135781 0.66 0.999977
Target:  5'- -gAGCGCGUGC-CGCUgucgGAGguGACc -3'
miRNA:   3'- cgUCGCGUACGcGCGAauuaUUU--UUG- -5'
23667 5' -45.3 NC_005261.1 + 100696 0.66 0.999973
Target:  5'- cGCGGcCGCG-GCGCGCgccgcccGAGCc -3'
miRNA:   3'- -CGUC-GCGUaCGCGCGaauuauuUUUG- -5'
23667 5' -45.3 NC_005261.1 + 29907 0.66 0.999972
Target:  5'- gGCAGCGCGcgagcggcUGCGCGagcuggc-GGACg -3'
miRNA:   3'- -CGUCGCGU--------ACGCGCgaauuauuUUUG- -5'
23667 5' -45.3 NC_005261.1 + 88820 0.66 0.999969
Target:  5'- gGCGGgGCGgcgGCGCGCgccggcccGGCg -3'
miRNA:   3'- -CGUCgCGUa--CGCGCGaauuauuuUUG- -5'
23667 5' -45.3 NC_005261.1 + 4403 0.66 0.999968
Target:  5'- gGCGGCgGCG-GCGCGCUg--------- -3'
miRNA:   3'- -CGUCG-CGUaCGCGCGAauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 112910 0.66 0.999968
Target:  5'- uGCcGCGC-UGCGUGCgcgAGggcGAGGGCg -3'
miRNA:   3'- -CGuCGCGuACGCGCGaa-UUa--UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 132661 0.66 0.999968
Target:  5'- aGCGGcCGCGUGUGgGUgc---GAGGACa -3'
miRNA:   3'- -CGUC-GCGUACGCgCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 137088 0.66 0.999968
Target:  5'- gGCGGCGCAgGa--GCU-AGUGGGAGCg -3'
miRNA:   3'- -CGUCGCGUaCgcgCGAaUUAUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 90064 0.66 0.999968
Target:  5'- aGCGGCGCcccGCGgGCgcc--GAGGGCa -3'
miRNA:   3'- -CGUCGCGua-CGCgCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 89110 0.66 0.999968
Target:  5'- gGCGcGCGCGuggcacUGCGCGCgcc---GGAGCa -3'
miRNA:   3'- -CGU-CGCGU------ACGCGCGaauuauUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 64800 0.66 0.999968
Target:  5'- cGCAGCGCcguucacGCGCGCg---------- -3'
miRNA:   3'- -CGUCGCGua-----CGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 134913 0.66 0.999968
Target:  5'- gGguGCGCAaGCGCaaGCUgGAgaccgcgGAGGACg -3'
miRNA:   3'- -CguCGCGUaCGCG--CGAaUUa------UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 96454 0.66 0.999967
Target:  5'- aGCGGCGgGguacagaagGcCGCGCUccgcggcugggggUGAUGGGAGCa -3'
miRNA:   3'- -CGUCGCgUa--------C-GCGCGA-------------AUUAUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 118574 0.66 0.999964
Target:  5'- cGCGcGCGCGgcgGCGCGCgccgccgccgcGGAGCu -3'
miRNA:   3'- -CGU-CGCGUa--CGCGCGaauuau-----UUUUG- -5'
23667 5' -45.3 NC_005261.1 + 62301 0.66 0.999956
Target:  5'- cGCcGCGCggGCGCGCg---------- -3'
miRNA:   3'- -CGuCGCGuaCGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 108564 0.66 0.999956
Target:  5'- cGCAcgucguGCGaCGUGCGCGC-----GAAGGCg -3'
miRNA:   3'- -CGU------CGC-GUACGCGCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 57610 0.66 0.999956
Target:  5'- gGCGGCGCAcGCcGCGCa---------- -3'
miRNA:   3'- -CGUCGCGUaCG-CGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 86202 0.66 0.999956
Target:  5'- gGCuccGCGUcgGCGCGCcgAAccGGGGCa -3'
miRNA:   3'- -CGu--CGCGuaCGCGCGaaUUauUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 13123 0.66 0.999956
Target:  5'- gGCGGcCGCGggGCGCGUguggucGGUGAcgGCg -3'
miRNA:   3'- -CGUC-GCGUa-CGCGCGaa----UUAUUuuUG- -5'
23667 5' -45.3 NC_005261.1 + 67670 0.66 0.999956
Target:  5'- cGCGGCGCcagGCGCG----GUGAGcGCg -3'
miRNA:   3'- -CGUCGCGua-CGCGCgaauUAUUUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.