miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23669 3' -53.3 NC_005261.1 + 58511 0.66 0.963216
Target:  5'- gGCGCCCGcgUCCAgGAggcGGAUCg-- -3'
miRNA:   3'- gCGCGGGUagAGGUgCUa--UCUAGacu -5'
23669 3' -53.3 NC_005261.1 + 817 0.66 0.959647
Target:  5'- gCGCGCCCcuuccCUCC-CGAUGGAga-GAa -3'
miRNA:   3'- -GCGCGGGua---GAGGuGCUAUCUagaCU- -5'
23669 3' -53.3 NC_005261.1 + 108262 0.66 0.951808
Target:  5'- cCGCGgCCAgcgUCUCCACGGccuGGUCcGGc -3'
miRNA:   3'- -GCGCgGGU---AGAGGUGCUau-CUAGaCU- -5'
23669 3' -53.3 NC_005261.1 + 102808 0.66 0.951808
Target:  5'- gGCGCCCAgccgCCGCGcgccGGUCUGc -3'
miRNA:   3'- gCGCGGGUaga-GGUGCuau-CUAGACu -5'
23669 3' -53.3 NC_005261.1 + 115206 0.67 0.943008
Target:  5'- aGCGCCCGUgCgUCCGCGGcgcGAUCg-- -3'
miRNA:   3'- gCGCGGGUA-G-AGGUGCUau-CUAGacu -5'
23669 3' -53.3 NC_005261.1 + 123961 0.67 0.927959
Target:  5'- aGCGCCCG-CUCCGCGA--GcgCUa- -3'
miRNA:   3'- gCGCGGGUaGAGGUGCUauCuaGAcu -5'
23669 3' -53.3 NC_005261.1 + 43673 0.67 0.927419
Target:  5'- aGuCGCCCAUgcagcggCUCCACGGcgAGGUcCUGGc -3'
miRNA:   3'- gC-GCGGGUA-------GAGGUGCUa-UCUA-GACU- -5'
23669 3' -53.3 NC_005261.1 + 1680 0.68 0.916678
Target:  5'- uGCGCCCGUCgagCCGCGGcAGcacgcgCUGc -3'
miRNA:   3'- gCGCGGGUAGa--GGUGCUaUCua----GACu -5'
23669 3' -53.3 NC_005261.1 + 68631 0.68 0.897898
Target:  5'- gCGCGCCCG-C-CCGCGAccgAGGUCa-- -3'
miRNA:   3'- -GCGCGGGUaGaGGUGCUa--UCUAGacu -5'
23669 3' -53.3 NC_005261.1 + 126092 0.7 0.845848
Target:  5'- gCGCGCCCAUCUUCGCGcguacuUGGuaauUCagGAa -3'
miRNA:   3'- -GCGCGGGUAGAGGUGCu-----AUCu---AGa-CU- -5'
23669 3' -53.3 NC_005261.1 + 62090 0.7 0.829054
Target:  5'- gCGCuGCCCAgCUgCACGAUGGcgUUGGc -3'
miRNA:   3'- -GCG-CGGGUaGAgGUGCUAUCuaGACU- -5'
23669 3' -53.3 NC_005261.1 + 20778 0.7 0.80972
Target:  5'- aCGCGCCCGUCUUCGCGcacgucgCUGc -3'
miRNA:   3'- -GCGCGGGUAGAGGUGCuaucua-GACu -5'
23669 3' -53.3 NC_005261.1 + 131952 0.73 0.653055
Target:  5'- cCGCGCCCGUCUaCCG-GGUGGAgCUGc -3'
miRNA:   3'- -GCGCGGGUAGA-GGUgCUAUCUaGACu -5'
23669 3' -53.3 NC_005261.1 + 120451 0.75 0.569642
Target:  5'- uGCGCCUGcUCUCCGCGAUAGAc---- -3'
miRNA:   3'- gCGCGGGU-AGAGGUGCUAUCUagacu -5'
23669 3' -53.3 NC_005261.1 + 35404 1.09 0.004615
Target:  5'- cCGCGCCCAUCUCCACGAUAGAUCUGAc -3'
miRNA:   3'- -GCGCGGGUAGAGGUGCUAUCUAGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.