miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23669 5' -66.8 NC_005261.1 + 110010 0.66 0.453867
Target:  5'- aCGCCCGCCgGCgCCGCc-GUCcuuucgccuGGCg -3'
miRNA:   3'- -GCGGGCGGgCGgGGCGccCAGau-------CCG- -5'
23669 5' -66.8 NC_005261.1 + 135019 0.66 0.453867
Target:  5'- gGCCCGCaCGCggCCGCGGcGgcgAGGCc -3'
miRNA:   3'- gCGGGCGgGCGg-GGCGCC-CagaUCCG- -5'
23669 5' -66.8 NC_005261.1 + 33271 0.66 0.453867
Target:  5'- gCGgCC-CCCGuCCCCGUcccGGUCcgUGGGCa -3'
miRNA:   3'- -GCgGGcGGGC-GGGGCGc--CCAG--AUCCG- -5'
23669 5' -66.8 NC_005261.1 + 102809 0.66 0.453867
Target:  5'- gCGCCCaG-CCGCCgCGCGccGGUCUGcGCc -3'
miRNA:   3'- -GCGGG-CgGGCGGgGCGC--CCAGAUcCG- -5'
23669 5' -66.8 NC_005261.1 + 99865 0.66 0.453867
Target:  5'- cCGCCgCGCgCCGCCgCCGCucGG-CgcgaGGGCg -3'
miRNA:   3'- -GCGG-GCG-GGCGG-GGCGc-CCaGa---UCCG- -5'
23669 5' -66.8 NC_005261.1 + 16975 0.66 0.453867
Target:  5'- gCGUgCGCCC-CaCCUGCGGGUCc--GCg -3'
miRNA:   3'- -GCGgGCGGGcG-GGGCGCCCAGaucCG- -5'
23669 5' -66.8 NC_005261.1 + 58225 0.66 0.453867
Target:  5'- aGCgCGCCCGCggCgGCGGGgucCUcGGCc -3'
miRNA:   3'- gCGgGCGGGCGg-GgCGCCCa--GAuCCG- -5'
23669 5' -66.8 NC_005261.1 + 117213 0.66 0.448752
Target:  5'- gGCgCGCCCGCUgccugggcgccgaguCCGCcucGGGUC-GGGUc -3'
miRNA:   3'- gCGgGCGGGCGG---------------GGCG---CCCAGaUCCG- -5'
23669 5' -66.8 NC_005261.1 + 14762 0.66 0.445359
Target:  5'- cCGCgCCGCgacaggggggCCGCCCCGCGcaGGUgccgCUcccgcAGGCu -3'
miRNA:   3'- -GCG-GGCG----------GGCGGGGCGC--CCA----GA-----UCCG- -5'
23669 5' -66.8 NC_005261.1 + 44255 0.66 0.445359
Target:  5'- gGCCgaCGCCgCGgCgCGCGGGg--GGGCg -3'
miRNA:   3'- gCGG--GCGG-GCgGgGCGCCCagaUCCG- -5'
23669 5' -66.8 NC_005261.1 + 120184 0.66 0.445359
Target:  5'- cCGCCCaCCCGCCCaaccugcgcUGCGaGGUUUccuGGUu -3'
miRNA:   3'- -GCGGGcGGGCGGG---------GCGC-CCAGAu--CCG- -5'
23669 5' -66.8 NC_005261.1 + 107673 0.66 0.445359
Target:  5'- gGcCCCGCCgggcguUGCCgCCGCGGcGg--GGGCg -3'
miRNA:   3'- gC-GGGCGG------GCGG-GGCGCC-CagaUCCG- -5'
23669 5' -66.8 NC_005261.1 + 76124 0.66 0.445359
Target:  5'- gCGCCgCGCCgGCgCCCGUcgugGaGGUCguggcGGCg -3'
miRNA:   3'- -GCGG-GCGGgCG-GGGCG----C-CCAGau---CCG- -5'
23669 5' -66.8 NC_005261.1 + 78143 0.66 0.445359
Target:  5'- cCGCCCcggcGCCCGCCgCUGCcGG-C-GGGCc -3'
miRNA:   3'- -GCGGG----CGGGCGG-GGCGcCCaGaUCCG- -5'
23669 5' -66.8 NC_005261.1 + 90794 0.66 0.445359
Target:  5'- gGCCgGCgCGCgcuaCCGCGugcgcuGGUCUAcGGCg -3'
miRNA:   3'- gCGGgCGgGCGg---GGCGC------CCAGAU-CCG- -5'
23669 5' -66.8 NC_005261.1 + 4455 0.66 0.444513
Target:  5'- gGCCCuccagcggcggcgGCCCGUCgCGCGGcGcCgcGGCg -3'
miRNA:   3'- gCGGG-------------CGGGCGGgGCGCC-CaGauCCG- -5'
23669 5' -66.8 NC_005261.1 + 59518 0.66 0.443668
Target:  5'- aCGCgCGCCCuggagcaGCCCCGCcgccaccgcgcgcGGGcuUCUAaucGGCg -3'
miRNA:   3'- -GCGgGCGGG-------CGGGGCG-------------CCC--AGAU---CCG- -5'
23669 5' -66.8 NC_005261.1 + 59715 0.66 0.43694
Target:  5'- aGaCCCGCCCGCCggGCGGcagCggcGGCg -3'
miRNA:   3'- gC-GGGCGGGCGGggCGCCca-Gau-CCG- -5'
23669 5' -66.8 NC_005261.1 + 85359 0.66 0.43694
Target:  5'- gGCCCGCUgaggauguucgCGCCgCCGCccucGGGcuUCUgguAGGCg -3'
miRNA:   3'- gCGGGCGG-----------GCGG-GGCG----CCC--AGA---UCCG- -5'
23669 5' -66.8 NC_005261.1 + 80871 0.66 0.43694
Target:  5'- gGCgCGCUCaGCCgCGCGGG-CUucagcGGCg -3'
miRNA:   3'- gCGgGCGGG-CGGgGCGCCCaGAu----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.