miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2367 5' -54.7 NC_001416.1 + 2592 0.68 0.549082
Target:  5'- cAGCGCacugagAUCCAGCUGCcagCGGGAa-- -3'
miRNA:   3'- -UUGCGg-----UAGGUCGACGua-GUCCUagu -5'
2367 5' -54.7 NC_001416.1 + 3045 1.06 0.001134
Target:  5'- cAACGCCAUCCAGCUGCAUCAGGAUCAu -3'
miRNA:   3'- -UUGCGGUAGGUCGACGUAGUCCUAGU- -5'
2367 5' -54.7 NC_001416.1 + 3791 0.66 0.639816
Target:  5'- cAGCGCCgGUCCGGCUGgG--AGGcgCAa -3'
miRNA:   3'- -UUGCGG-UAGGUCGACgUagUCCuaGU- -5'
2367 5' -54.7 NC_001416.1 + 7212 0.66 0.646669
Target:  5'- aAGgGCCAUgauuacgCCAGUUGUacggacacgaacucAUCAGGGUCAg -3'
miRNA:   3'- -UUgCGGUA-------GGUCGACG--------------UAGUCCUAGU- -5'
2367 5' -54.7 NC_001416.1 + 7819 0.69 0.452412
Target:  5'- cACGCCcuGUCCGGCauaGCugauauuuUCAGGGUCAu -3'
miRNA:   3'- uUGCGG--UAGGUCGa--CGu-------AGUCCUAGU- -5'
2367 5' -54.7 NC_001416.1 + 8502 0.67 0.560271
Target:  5'- aAACGCCGUggUCAGCgGCAccgccaUCGGGAUUu -3'
miRNA:   3'- -UUGCGGUA--GGUCGaCGU------AGUCCUAGu -5'
2367 5' -54.7 NC_001416.1 + 10797 0.66 0.651235
Target:  5'- cGugGCUgAUCCuGCUGCAaCAGGGggggCAg -3'
miRNA:   3'- -UugCGG-UAGGuCGACGUaGUCCUa---GU- -5'
2367 5' -54.7 NC_001416.1 + 10875 0.66 0.662634
Target:  5'- -cUGCCcccCCuGUUGCAgCAGGAUCAg -3'
miRNA:   3'- uuGCGGua-GGuCGACGUaGUCCUAGU- -5'
2367 5' -54.7 NC_001416.1 + 16094 0.68 0.537964
Target:  5'- cGGCGUCAUCCuGC-GCAUCcGGAUa- -3'
miRNA:   3'- -UUGCGGUAGGuCGaCGUAGuCCUAgu -5'
2367 5' -54.7 NC_001416.1 + 20025 0.68 0.537964
Target:  5'- cGAUGCCAgugcaUCAGCUGC-UCAGG-UCGc -3'
miRNA:   3'- -UUGCGGUa----GGUCGACGuAGUCCuAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.