miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23670 3' -57 NC_005261.1 + 27635 0.66 0.860141
Target:  5'- -aCCGuuGCUUGccGCCGCCGUCGG-GACGa -3'
miRNA:   3'- gaGGC--UGGAU--CGGCGGUAGCUgCUGU- -5'
23670 3' -57 NC_005261.1 + 32477 0.66 0.844529
Target:  5'- aCUCgGGCUUcccggGGCCGgCGaCGGCGGCAu -3'
miRNA:   3'- -GAGgCUGGA-----UCGGCgGUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 72233 0.66 0.852434
Target:  5'- -gCCGGCCggcgguGCgCGCaaaGUCGACGugAa -3'
miRNA:   3'- gaGGCUGGau----CG-GCGg--UAGCUGCugU- -5'
23670 3' -57 NC_005261.1 + 112057 0.66 0.844529
Target:  5'- -gCCGGCCUucgGGCgUGCCcucGUCGGCGAgGg -3'
miRNA:   3'- gaGGCUGGA---UCG-GCGG---UAGCUGCUgU- -5'
23670 3' -57 NC_005261.1 + 126545 0.66 0.852434
Target:  5'- -cUCGGCCacgcGCCGCCGUCG-CGcGCAa -3'
miRNA:   3'- gaGGCUGGau--CGGCGGUAGCuGC-UGU- -5'
23670 3' -57 NC_005261.1 + 95016 0.66 0.860141
Target:  5'- -gCgGGCUauaaAGCCGCCGcCGGCGGCGc -3'
miRNA:   3'- gaGgCUGGa---UCGGCGGUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 10090 0.66 0.851652
Target:  5'- -cCCGACCcccGCCGCgccccggCAgcggCGGCGACAg -3'
miRNA:   3'- gaGGCUGGau-CGGCG-------GUa---GCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 88259 0.66 0.844529
Target:  5'- uUCCGcuucaucgcGCCgcGCUGCCuggaCGACGACGg -3'
miRNA:   3'- gAGGC---------UGGauCGGCGGua--GCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 102608 0.66 0.87494
Target:  5'- uUCCGcguCCUcGCCGCCAgcggccUCGGCcGCGg -3'
miRNA:   3'- gAGGCu--GGAuCGGCGGU------AGCUGcUGU- -5'
23670 3' -57 NC_005261.1 + 133139 0.66 0.860141
Target:  5'- uCUCCcugcgGugCgcgcucGCCGCCGUCGGCGuCGc -3'
miRNA:   3'- -GAGG-----CugGau----CGGCGGUAGCUGCuGU- -5'
23670 3' -57 NC_005261.1 + 2521 0.66 0.851652
Target:  5'- --gCGACCUcggggcggcaguaGGCCGCCAgCGccGCGGCGc -3'
miRNA:   3'- gagGCUGGA-------------UCGGCGGUaGC--UGCUGU- -5'
23670 3' -57 NC_005261.1 + 103583 0.66 0.844529
Target:  5'- -cCCGcGCCgucgcucGCCGCCGUggccgCGGCGGCAg -3'
miRNA:   3'- gaGGC-UGGau-----CGGCGGUA-----GCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 102228 0.66 0.844529
Target:  5'- --aCGGCCUcgauGGCCGCCGUCGcccGCuGCGc -3'
miRNA:   3'- gagGCUGGA----UCGGCGGUAGC---UGcUGU- -5'
23670 3' -57 NC_005261.1 + 4012 0.66 0.844529
Target:  5'- gCUCaUGGCCacgcaGGCCGCCA-CGuGCGGCAg -3'
miRNA:   3'- -GAG-GCUGGa----UCGGCGGUaGC-UGCUGU- -5'
23670 3' -57 NC_005261.1 + 10776 0.66 0.860141
Target:  5'- -gUCGuCCUcGUCGUCAUCGACGuCAu -3'
miRNA:   3'- gaGGCuGGAuCGGCGGUAGCUGCuGU- -5'
23670 3' -57 NC_005261.1 + 35044 0.66 0.844529
Target:  5'- -gCCGcCCUaacGGCgGCCGcgCGGCGGCGg -3'
miRNA:   3'- gaGGCuGGA---UCGgCGGUa-GCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 20878 0.66 0.844529
Target:  5'- -gCCGGCCaucgccagcucgUGGCCGCCAUaUGA-GACAc -3'
miRNA:   3'- gaGGCUGG------------AUCGGCGGUA-GCUgCUGU- -5'
23670 3' -57 NC_005261.1 + 86611 0.66 0.860141
Target:  5'- -gUCGGCCgcGCCGCCGUCGuCcACc -3'
miRNA:   3'- gaGGCUGGauCGGCGGUAGCuGcUGu -5'
23670 3' -57 NC_005261.1 + 30916 0.66 0.860141
Target:  5'- -cCCGGCCccucccGGCCGCCGgcgcagccccUCGGgGGCGg -3'
miRNA:   3'- gaGGCUGGa-----UCGGCGGU----------AGCUgCUGU- -5'
23670 3' -57 NC_005261.1 + 5911 0.66 0.860141
Target:  5'- -gCCGGCC-GGCUgGCUAgcucgcUCGACGGCAa -3'
miRNA:   3'- gaGGCUGGaUCGG-CGGU------AGCUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.