miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23670 3' -57 NC_005261.1 + 1220 0.7 0.636907
Target:  5'- -cCCG-CCgauGCCGCCGUCGcCGGCc -3'
miRNA:   3'- gaGGCuGGau-CGGCGGUAGCuGCUGu -5'
23670 3' -57 NC_005261.1 + 1978 0.71 0.586167
Target:  5'- -cCCGAC--GGCCggGCCAUCGGCGGCc -3'
miRNA:   3'- gaGGCUGgaUCGG--CGGUAGCUGCUGu -5'
23670 3' -57 NC_005261.1 + 2521 0.66 0.851652
Target:  5'- --gCGACCUcggggcggcaguaGGCCGCCAgCGccGCGGCGc -3'
miRNA:   3'- gagGCUGGA-------------UCGGCGGUaGC--UGCUGU- -5'
23670 3' -57 NC_005261.1 + 2595 0.75 0.365167
Target:  5'- --gCGGCggaAGCCGCCGUCGGCGGCGg -3'
miRNA:   3'- gagGCUGga-UCGGCGGUAGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 4012 0.66 0.844529
Target:  5'- gCUCaUGGCCacgcaGGCCGCCA-CGuGCGGCAg -3'
miRNA:   3'- -GAG-GCUGGa----UCGGCGGUaGC-UGCUGU- -5'
23670 3' -57 NC_005261.1 + 4883 0.69 0.696569
Target:  5'- -gCCG-CCUcagccgcGGCCGCCucggcuUCGGCGGCGg -3'
miRNA:   3'- gaGGCuGGA-------UCGGCGGu-----AGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 5433 0.69 0.697569
Target:  5'- --aCGACCgcGGCCGCgG-CGGCGGCAa -3'
miRNA:   3'- gagGCUGGa-UCGGCGgUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 5522 0.67 0.811079
Target:  5'- --gCGGCgaGGCCGCCGgcuUCGGCGcGCAg -3'
miRNA:   3'- gagGCUGgaUCGGCGGU---AGCUGC-UGU- -5'
23670 3' -57 NC_005261.1 + 5911 0.66 0.860141
Target:  5'- -gCCGGCC-GGCUgGCUAgcucgcUCGACGGCAa -3'
miRNA:   3'- gaGGCUGGaUCGG-CGGU------AGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 10090 0.66 0.851652
Target:  5'- -cCCGACCcccGCCGCgccccggCAgcggCGGCGACAg -3'
miRNA:   3'- gaGGCUGGau-CGGCG-------GUa---GCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 10776 0.66 0.860141
Target:  5'- -gUCGuCCUcGUCGUCAUCGACGuCAu -3'
miRNA:   3'- gaGGCuGGAuCGGCGGUAGCUGCuGU- -5'
23670 3' -57 NC_005261.1 + 11916 0.7 0.667365
Target:  5'- -cCCGGCCcGGCCGgCGgcugCGGCGGCc -3'
miRNA:   3'- gaGGCUGGaUCGGCgGUa---GCUGCUGu -5'
23670 3' -57 NC_005261.1 + 12341 0.73 0.459849
Target:  5'- -gCCGGCgcGGCCGCCGccgCGGCGGCAa -3'
miRNA:   3'- gaGGCUGgaUCGGCGGUa--GCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 15376 0.66 0.860141
Target:  5'- gCUCgGcGCCcucggcGCCGCCGUCGAugcCGACGc -3'
miRNA:   3'- -GAGgC-UGGau----CGGCGGUAGCU---GCUGU- -5'
23670 3' -57 NC_005261.1 + 15579 0.66 0.870588
Target:  5'- -gUCG-CCUguagcaugacgaagcAGUCGCCGUCGACGAg- -3'
miRNA:   3'- gaGGCuGGA---------------UCGGCGGUAGCUGCUgu -5'
23670 3' -57 NC_005261.1 + 16381 0.69 0.717448
Target:  5'- uCUCCGuggGCCUcGCCGUCGUCGuCGcCGg -3'
miRNA:   3'- -GAGGC---UGGAuCGGCGGUAGCuGCuGU- -5'
23670 3' -57 NC_005261.1 + 16683 0.67 0.819702
Target:  5'- gUCCGugUaGGCgaccgCGCCGUCGAUGuACAg -3'
miRNA:   3'- gAGGCugGaUCG-----GCGGUAGCUGC-UGU- -5'
23670 3' -57 NC_005261.1 + 19797 0.7 0.636907
Target:  5'- cCUCCGAgCCgggggucAGCCGCCgGUCGAUG-CAa -3'
miRNA:   3'- -GAGGCU-GGa------UCGGCGG-UAGCUGCuGU- -5'
23670 3' -57 NC_005261.1 + 20535 0.67 0.828156
Target:  5'- uCUCCGACCgcGCUcuGCUGgacgUGGCGGCGg -3'
miRNA:   3'- -GAGGCUGGauCGG--CGGUa---GCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 20878 0.66 0.844529
Target:  5'- -gCCGGCCaucgccagcucgUGGCCGCCAUaUGA-GACAc -3'
miRNA:   3'- gaGGCUGG------------AUCGGCGGUA-GCUgCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.