miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23670 3' -57 NC_005261.1 + 134673 0.69 0.727284
Target:  5'- -aCC-ACC-AGCCGCCAggaccCGACGACu -3'
miRNA:   3'- gaGGcUGGaUCGGCGGUa----GCUGCUGu -5'
23670 3' -57 NC_005261.1 + 134463 0.87 0.074515
Target:  5'- gCUCU-ACCUGGCCGCCAUCGugGGCGg -3'
miRNA:   3'- -GAGGcUGGAUCGGCGGUAGCugCUGU- -5'
23670 3' -57 NC_005261.1 + 133798 0.66 0.860141
Target:  5'- aUCCcGCCcgGGCUGCuCGaCGGCGACGa -3'
miRNA:   3'- gAGGcUGGa-UCGGCG-GUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 133292 0.74 0.4507
Target:  5'- -cCCG-CCUcguGGCCGCCAagGACGACu -3'
miRNA:   3'- gaGGCuGGA---UCGGCGGUagCUGCUGu -5'
23670 3' -57 NC_005261.1 + 133139 0.66 0.860141
Target:  5'- uCUCCcugcgGugCgcgcucGCCGCCGUCGGCGuCGc -3'
miRNA:   3'- -GAGG-----CugGau----CGGCGGUAGCUGCuGU- -5'
23670 3' -57 NC_005261.1 + 132961 0.7 0.626736
Target:  5'- -gCCGACgUGGCCGCCuUCGucgccgcgcaccGCGACc -3'
miRNA:   3'- gaGGCUGgAUCGGCGGuAGC------------UGCUGu -5'
23670 3' -57 NC_005261.1 + 132603 0.67 0.811079
Target:  5'- -cCCGGCCcggcgAGCCGCCAgggggCGcUGGCGc -3'
miRNA:   3'- gaGGCUGGa----UCGGCGGUa----GCuGCUGU- -5'
23670 3' -57 NC_005261.1 + 132012 0.66 0.867645
Target:  5'- --gCGACaacugGGCCGCCGUCacgGACGugGc -3'
miRNA:   3'- gagGCUGga---UCGGCGGUAG---CUGCugU- -5'
23670 3' -57 NC_005261.1 + 131882 0.67 0.802296
Target:  5'- --gCGGCC--GCCGCCGcacgCGACGGCGc -3'
miRNA:   3'- gagGCUGGauCGGCGGUa---GCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 131470 0.71 0.586167
Target:  5'- cCUCCcGCCUccgcgAGCgCGCCGUCGACGcCu -3'
miRNA:   3'- -GAGGcUGGA-----UCG-GCGGUAGCUGCuGu -5'
23670 3' -57 NC_005261.1 + 128862 0.66 0.87494
Target:  5'- -cCCG-CCUcGUCGCUGcCGACGACGa -3'
miRNA:   3'- gaGGCuGGAuCGGCGGUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 127005 0.7 0.65723
Target:  5'- -gCCGACCccGCCGCaggCGGCGGCc -3'
miRNA:   3'- gaGGCUGGauCGGCGguaGCUGCUGu -5'
23670 3' -57 NC_005261.1 + 126545 0.66 0.852434
Target:  5'- -cUCGGCCacgcGCCGCCGUCG-CGcGCAa -3'
miRNA:   3'- gaGGCUGGau--CGGCGGUAGCuGC-UGU- -5'
23670 3' -57 NC_005261.1 + 126059 0.68 0.746704
Target:  5'- gCUCCGGCgCcAGCCGCCcgccggccUCGGCGGg- -3'
miRNA:   3'- -GAGGCUG-GaUCGGCGGu-------AGCUGCUgu -5'
23670 3' -57 NC_005261.1 + 121868 0.69 0.70754
Target:  5'- gCUCCcGCCgAGCCGCaucgacUCGACGAUg -3'
miRNA:   3'- -GAGGcUGGaUCGGCGgu----AGCUGCUGu -5'
23670 3' -57 NC_005261.1 + 121823 0.68 0.775068
Target:  5'- gCUCUG-Cg-GGCCGCCG-CGGCGGCGc -3'
miRNA:   3'- -GAGGCuGgaUCGGCGGUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 121625 0.69 0.717448
Target:  5'- cCUCCcGCCgcucggcGGCCGCCGcCGGCGAg- -3'
miRNA:   3'- -GAGGcUGGa------UCGGCGGUaGCUGCUgu -5'
23670 3' -57 NC_005261.1 + 121484 0.67 0.828156
Target:  5'- -aCCGGCU--GCCGCCAcggGGCGGCGg -3'
miRNA:   3'- gaGGCUGGauCGGCGGUag-CUGCUGU- -5'
23670 3' -57 NC_005261.1 + 119630 0.68 0.784281
Target:  5'- aCUgCGGCgUGGCCgacaacGCCAcCGGCGGCGc -3'
miRNA:   3'- -GAgGCUGgAUCGG------CGGUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 118620 0.77 0.298332
Target:  5'- -gCCGuugcCCUGGCCGCCG-CGGCGGCGc -3'
miRNA:   3'- gaGGCu---GGAUCGGCGGUaGCUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.