miRNA display CGI


Results 1 - 20 of 130 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23670 3' -57 NC_005261.1 + 97927 0.72 0.506986
Target:  5'- -cCCGcuguaCUGGCCGCCAgcucCGGCGGCAa -3'
miRNA:   3'- gaGGCug---GAUCGGCGGUa---GCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 102608 0.66 0.87494
Target:  5'- uUCCGcguCCUcGCCGCCAgcggccUCGGCcGCGg -3'
miRNA:   3'- gAGGCu--GGAuCGGCGGU------AGCUGcUGU- -5'
23670 3' -57 NC_005261.1 + 61005 0.71 0.596277
Target:  5'- cCUCCGGCUccGGCauCGCCGUCGugggGCGGCAc -3'
miRNA:   3'- -GAGGCUGGa-UCG--GCGGUAGC----UGCUGU- -5'
23670 3' -57 NC_005261.1 + 80113 0.71 0.596277
Target:  5'- -aCCGGCUUGGgCGCCGcggcagCGGCGGCGc -3'
miRNA:   3'- gaGGCUGGAUCgGCGGUa-----GCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 131470 0.71 0.586167
Target:  5'- cCUCCcGCCUccgcgAGCgCGCCGUCGACGcCu -3'
miRNA:   3'- -GAGGcUGGA-----UCG-GCGGUAGCUGCuGu -5'
23670 3' -57 NC_005261.1 + 1978 0.71 0.586167
Target:  5'- -cCCGAC--GGCCggGCCAUCGGCGGCc -3'
miRNA:   3'- gaGGCUGgaUCGG--CGGUAGCUGCUGu -5'
23670 3' -57 NC_005261.1 + 108445 0.72 0.556059
Target:  5'- -cCCGGCCgagcAGCgCGUCGUCGGCGAgGa -3'
miRNA:   3'- gaGGCUGGa---UCG-GCGGUAGCUGCUgU- -5'
23670 3' -57 NC_005261.1 + 49516 0.72 0.546119
Target:  5'- cCUCCGaaaaggucgcggGCC-AGCCGCCGUCcGCGGCc -3'
miRNA:   3'- -GAGGC------------UGGaUCGGCGGUAGcUGCUGu -5'
23670 3' -57 NC_005261.1 + 69266 0.72 0.546119
Target:  5'- -gCCGACCccggcgAGCCGCCcgCGcCGACc -3'
miRNA:   3'- gaGGCUGGa-----UCGGCGGuaGCuGCUGu -5'
23670 3' -57 NC_005261.1 + 98131 0.72 0.536236
Target:  5'- -gCCGcggcACC-GGCgGCCGUCGGCGGCAa -3'
miRNA:   3'- gaGGC----UGGaUCGgCGGUAGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 27775 0.72 0.536236
Target:  5'- -gCCGGCCUAGCUagccagccuuGCCGUCGAgCGAg- -3'
miRNA:   3'- gaGGCUGGAUCGG----------CGGUAGCU-GCUgu -5'
23670 3' -57 NC_005261.1 + 34862 0.96 0.017249
Target:  5'- cCUCCGACCUGaCCGCCAUCGACGACAc -3'
miRNA:   3'- -GAGGCUGGAUcGGCGGUAGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 12341 0.73 0.459849
Target:  5'- -gCCGGCgcGGCCGCCGccgCGGCGGCAa -3'
miRNA:   3'- gaGGCUGgaUCGGCGGUa--GCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 133292 0.74 0.4507
Target:  5'- -cCCG-CCUcguGGCCGCCAagGACGACu -3'
miRNA:   3'- gaGGCuGGA---UCGGCGGUagCUGCUGu -5'
23670 3' -57 NC_005261.1 + 106378 0.74 0.4507
Target:  5'- -gCCGucGCCguuGCCGCCgcuGUCGGCGACAu -3'
miRNA:   3'- gaGGC--UGGau-CGGCGG---UAGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 69680 0.74 0.415142
Target:  5'- -gCCGGCaucacGCCGCCGUCaGACGACGa -3'
miRNA:   3'- gaGGCUGgau--CGGCGGUAG-CUGCUGU- -5'
23670 3' -57 NC_005261.1 + 76671 0.75 0.381358
Target:  5'- -gCCGugCUGGCCcucGCCGaCGACGACGc -3'
miRNA:   3'- gaGGCugGAUCGG---CGGUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 2595 0.75 0.365167
Target:  5'- --gCGGCggaAGCCGCCGUCGGCGGCGg -3'
miRNA:   3'- gagGCUGga-UCGGCGGUAGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 83002 0.76 0.341786
Target:  5'- cCUCgCGcACCgAGCCGCCGUCGcCGGCGc -3'
miRNA:   3'- -GAG-GC-UGGaUCGGCGGUAGCuGCUGU- -5'
23670 3' -57 NC_005261.1 + 118620 0.77 0.298332
Target:  5'- -gCCGuugcCCUGGCCGCCG-CGGCGGCGc -3'
miRNA:   3'- gaGGCu---GGAUCGGCGGUaGCUGCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.