miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23670 3' -57 NC_005261.1 + 21205 0.67 0.836434
Target:  5'- -gCgGACgCUGGCCccgGCCG-CGACGGCGg -3'
miRNA:   3'- gaGgCUG-GAUCGG---CGGUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 21807 0.67 0.79336
Target:  5'- -gCCGGCCgGGCCggGCCcgCGGCGGg- -3'
miRNA:   3'- gaGGCUGGaUCGG--CGGuaGCUGCUgu -5'
23670 3' -57 NC_005261.1 + 23168 0.67 0.79336
Target:  5'- -cCCGGCa-GGCgCGCCGggGGCGACAg -3'
miRNA:   3'- gaGGCUGgaUCG-GCGGUagCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 25736 0.68 0.75627
Target:  5'- uCUCCcACCgGGCCGCgcUCGGCGAUc -3'
miRNA:   3'- -GAGGcUGGaUCGGCGguAGCUGCUGu -5'
23670 3' -57 NC_005261.1 + 27635 0.66 0.860141
Target:  5'- -aCCGuuGCUUGccGCCGCCGUCGG-GACGa -3'
miRNA:   3'- gaGGC--UGGAU--CGGCGGUAGCUgCUGU- -5'
23670 3' -57 NC_005261.1 + 27775 0.72 0.536236
Target:  5'- -gCCGGCCUAGCUagccagccuuGCCGUCGAgCGAg- -3'
miRNA:   3'- gaGGCUGGAUCGG----------CGGUAGCU-GCUgu -5'
23670 3' -57 NC_005261.1 + 30916 0.66 0.860141
Target:  5'- -cCCGGCCccucccGGCCGCCGgcgcagccccUCGGgGGCGg -3'
miRNA:   3'- gaGGCUGGa-----UCGGCGGU----------AGCUgCUGU- -5'
23670 3' -57 NC_005261.1 + 31110 0.7 0.647074
Target:  5'- --gCGGCCccGCCGCCGaCGGCGGCu -3'
miRNA:   3'- gagGCUGGauCGGCGGUaGCUGCUGu -5'
23670 3' -57 NC_005261.1 + 31190 0.66 0.87494
Target:  5'- --gCGGCCUAcuGCCGCCccgagGUCG-CGGCGc -3'
miRNA:   3'- gagGCUGGAU--CGGCGG-----UAGCuGCUGU- -5'
23670 3' -57 NC_005261.1 + 31471 0.68 0.784281
Target:  5'- --gCGGCCUgaguGGCCGCCGgugCG-CGGCGg -3'
miRNA:   3'- gagGCUGGA----UCGGCGGUa--GCuGCUGU- -5'
23670 3' -57 NC_005261.1 + 31672 0.67 0.828156
Target:  5'- cCUgCGG-CUGGCCGCgGcgCGGCGGCGg -3'
miRNA:   3'- -GAgGCUgGAUCGGCGgUa-GCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 32401 0.67 0.836434
Target:  5'- gUCCcgGAgCgcguGCCGCCGcCGGCGACGg -3'
miRNA:   3'- gAGG--CUgGau--CGGCGGUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 32477 0.66 0.844529
Target:  5'- aCUCgGGCUUcccggGGCCGgCGaCGGCGGCAu -3'
miRNA:   3'- -GAGgCUGGA-----UCGGCgGUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 34862 0.96 0.017249
Target:  5'- cCUCCGACCUGaCCGCCAUCGACGACAc -3'
miRNA:   3'- -GAGGCUGGAUcGGCGGUAGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 35044 0.66 0.844529
Target:  5'- -gCCGcCCUaacGGCgGCCGcgCGGCGGCGg -3'
miRNA:   3'- gaGGCuGGA---UCGgCGGUa-GCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 35961 0.7 0.667365
Target:  5'- -cCCGGCCaGGCCGCuCGgccgcuguagCGGCGGCGg -3'
miRNA:   3'- gaGGCUGGaUCGGCG-GUa---------GCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 37267 0.67 0.79336
Target:  5'- aUCCuGGCCgAGCCGUgCcgCGGCGACc -3'
miRNA:   3'- gAGG-CUGGaUCGGCG-GuaGCUGCUGu -5'
23670 3' -57 NC_005261.1 + 39326 0.67 0.811948
Target:  5'- gUCCaACCgcGCCGCCGcggccaagcugcgcgCGGCGGCAg -3'
miRNA:   3'- gAGGcUGGauCGGCGGUa--------------GCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 40236 0.67 0.828156
Target:  5'- uCUCUGGCCcgggGGCCgugagcGCCAU-GGCGGCGg -3'
miRNA:   3'- -GAGGCUGGa---UCGG------CGGUAgCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 42114 0.69 0.697569
Target:  5'- -gCCGGCCcagcAGCCcgGCCucGUCGAUGACAa -3'
miRNA:   3'- gaGGCUGGa---UCGG--CGG--UAGCUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.