miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23670 5' -60.9 NC_005261.1 + 53445 0.66 0.751703
Target:  5'- -----cGUCGGGCGUcgGGAGGUCGccGGGc -3'
miRNA:   3'- cagccuCAGCCUGCG--CCUCCAGC--CCC- -5'
23670 5' -60.9 NC_005261.1 + 44253 0.66 0.751703
Target:  5'- -gCGGccgacgccgCGGcGCGCGGGGGggCGGGGc -3'
miRNA:   3'- caGCCuca------GCC-UGCGCCUCCa-GCCCC- -5'
23670 5' -60.9 NC_005261.1 + 30598 0.66 0.751703
Target:  5'- -aCGGGGacggGGACGgGGAcGGggaCGGGGa -3'
miRNA:   3'- caGCCUCag--CCUGCgCCU-CCa--GCCCC- -5'
23670 5' -60.9 NC_005261.1 + 30628 0.66 0.751703
Target:  5'- -aCGGGGacggGGACGgGGAcGGggaCGGGGa -3'
miRNA:   3'- caGCCUCag--CCUGCgCCU-CCa--GCCCC- -5'
23670 5' -60.9 NC_005261.1 + 69940 0.66 0.742472
Target:  5'- gGUgGGAGcCGGGgauaGCGGAGGggccucCGGGc -3'
miRNA:   3'- -CAgCCUCaGCCUg---CGCCUCCa-----GCCCc -5'
23670 5' -60.9 NC_005261.1 + 32089 0.66 0.742472
Target:  5'- cUCGGGGagcCGGAcuuCGCGGAGGgcgaGGcGGc -3'
miRNA:   3'- cAGCCUCa--GCCU---GCGCCUCCag--CC-CC- -5'
23670 5' -60.9 NC_005261.1 + 30688 0.66 0.714284
Target:  5'- -aCGGGGacggGGACGgGGAGGcccgCGGGa -3'
miRNA:   3'- caGCCUCag--CCUGCgCCUCCa---GCCCc -5'
23670 5' -60.9 NC_005261.1 + 23926 0.66 0.714284
Target:  5'- -cUGGGGUgGGcucaccuCGCGGcGGGuUCGGGGu -3'
miRNA:   3'- caGCCUCAgCCu------GCGCC-UCC-AGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 126948 0.66 0.714284
Target:  5'- --aGGGGcgcCGGGCGCGGGGG-CGGc- -3'
miRNA:   3'- cagCCUCa--GCCUGCGCCUCCaGCCcc -5'
23670 5' -60.9 NC_005261.1 + 36997 0.66 0.70475
Target:  5'- -cCGGAGcccgCGGGCuGCGcGGGGccaguuugCGGGGg -3'
miRNA:   3'- caGCCUCa---GCCUG-CGC-CUCCa-------GCCCC- -5'
23670 5' -60.9 NC_005261.1 + 129685 0.66 0.70475
Target:  5'- cGUCGcGAcUCGGGC-CGG-GGcCGGGGc -3'
miRNA:   3'- -CAGC-CUcAGCCUGcGCCuCCaGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 109326 0.66 0.70475
Target:  5'- -cCGcGAGcgCGGcCGCGG-GGUCGGcGGc -3'
miRNA:   3'- caGC-CUCa-GCCuGCGCCuCCAGCC-CC- -5'
23670 5' -60.9 NC_005261.1 + 115471 0.66 0.695161
Target:  5'- cUCGGuGUCGGuCGCGGGcucGGccgCGGcGGc -3'
miRNA:   3'- cAGCCuCAGCCuGCGCCU---CCa--GCC-CC- -5'
23670 5' -60.9 NC_005261.1 + 13671 0.66 0.695161
Target:  5'- -gCGGGGg-GGGCGCGGGGcGcgCGGGc -3'
miRNA:   3'- caGCCUCagCCUGCGCCUC-Ca-GCCCc -5'
23670 5' -60.9 NC_005261.1 + 27193 0.66 0.695161
Target:  5'- --gGGAGcaaaCGGGCagGCGGAGGg-GGGGa -3'
miRNA:   3'- cagCCUCa---GCCUG--CGCCUCCagCCCC- -5'
23670 5' -60.9 NC_005261.1 + 13089 0.66 0.695161
Target:  5'- cGUCGG---CGGGCgGCGGGcucGGcUCGGGGg -3'
miRNA:   3'- -CAGCCucaGCCUG-CGCCU---CC-AGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 25381 0.67 0.675844
Target:  5'- -cCGGca-CGG-CGCGcGGGUCGGGGg -3'
miRNA:   3'- caGCCucaGCCuGCGCcUCCAGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 84105 0.67 0.675844
Target:  5'- -aCGGGGgcgGGAUGgGGAGGggggcagcgggCGGGGu -3'
miRNA:   3'- caGCCUCag-CCUGCgCCUCCa----------GCCCC- -5'
23670 5' -60.9 NC_005261.1 + 5344 0.67 0.656398
Target:  5'- gGUCGGccagccggcuGGUCGGugGauaCGGAGa-CGGGGg -3'
miRNA:   3'- -CAGCC----------UCAGCCugC---GCCUCcaGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 98397 0.67 0.646644
Target:  5'- cGUgGGGG-CGGGCGCGGAcucuGGU-GGGu -3'
miRNA:   3'- -CAgCCUCaGCCUGCGCCU----CCAgCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.