Results 1 - 20 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 34898 | 1.09 | 0.001291 |
Target: 5'- aGUCGGAGUCGGACGCGGAGGUCGGGGc -3' miRNA: 3'- -CAGCCUCAGCCUGCGCCUCCAGCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 11466 | 0.86 | 0.053137 |
Target: 5'- -gCGGAG-CGGGCGCGGAGGggCGGGGc -3' miRNA: 3'- caGCCUCaGCCUGCGCCUCCa-GCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 15053 | 0.81 | 0.100613 |
Target: 5'- --gGGGGUCGGGguCGCGGcgGGGUCGGGGg -3' miRNA: 3'- cagCCUCAGCCU--GCGCC--UCCAGCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 32920 | 0.78 | 0.177408 |
Target: 5'- cGUgGGGGgcggCGGGCGgGGGGGgggCGGGGa -3' miRNA: 3'- -CAgCCUCa---GCCUGCgCCUCCa--GCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 994 | 0.77 | 0.190621 |
Target: 5'- -gCGGAGgagaCGGGgGCGGGGGgCGGGGg -3' miRNA: 3'- caGCCUCa---GCCUgCGCCUCCaGCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 9617 | 0.76 | 0.241036 |
Target: 5'- -cCGGGGUgGGcAgGCGGGGGUgGGGGc -3' miRNA: 3'- caGCCUCAgCC-UgCGCCUCCAgCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 110794 | 0.75 | 0.276339 |
Target: 5'- -cCGGGGgacggCGGGCGaGGAGG-CGGGGg -3' miRNA: 3'- caGCCUCa----GCCUGCgCCUCCaGCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 13702 | 0.74 | 0.282609 |
Target: 5'- -gCGGGG-CGGGCuggggGCGGGGGUgGGGGu -3' miRNA: 3'- caGCCUCaGCCUG-----CGCCUCCAgCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 26880 | 0.74 | 0.288991 |
Target: 5'- --gGGGGUgGGugGgGGGGGgCGGGGg -3' miRNA: 3'- cagCCUCAgCCugCgCCUCCaGCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 74894 | 0.74 | 0.291576 |
Target: 5'- -gCGGAGUCGGcggcccgcgcuggccGCGCGGGGGagggcgaggaCGGGGa -3' miRNA: 3'- caGCCUCAGCC---------------UGCGCCUCCa---------GCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 81337 | 0.74 | 0.295487 |
Target: 5'- cGUCGGGgccGUCGGcgGgGCGGGGGcuugCGGGGg -3' miRNA: 3'- -CAGCCU---CAGCC--UgCGCCUCCa---GCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 34826 | 0.74 | 0.295487 |
Target: 5'- gGUCGGAGUCGGA---GGAGucgucGUCGGGGc -3' miRNA: 3'- -CAGCCUCAGCCUgcgCCUC-----CAGCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 58285 | 0.74 | 0.315651 |
Target: 5'- -aCGGGGcCGGcGCGcCGGGGGgcgCGGGGa -3' miRNA: 3'- caGCCUCaGCC-UGC-GCCUCCa--GCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 96848 | 0.73 | 0.3226 |
Target: 5'- -cCGGGGUC-GACG-GGGGGcUCGGGGg -3' miRNA: 3'- caGCCUCAGcCUGCgCCUCC-AGCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 80059 | 0.73 | 0.329662 |
Target: 5'- -cUGGcGG-CGGGCGCGGGGGgcgUGGGGg -3' miRNA: 3'- caGCC-UCaGCCUGCGCCUCCa--GCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 30568 | 0.73 | 0.351528 |
Target: 5'- -cCGGGGccUCGGACGgGGAcGGggaCGGGGa -3' miRNA: 3'- caGCCUC--AGCCUGCgCCU-CCa--GCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 137051 | 0.73 | 0.351528 |
Target: 5'- -gCGGAccGUCGGcagGCGCGGAGGcgCGGGc -3' miRNA: 3'- caGCCU--CAGCC---UGCGCCUCCa-GCCCc -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 30451 | 0.72 | 0.366667 |
Target: 5'- --gGGAGgacgaGGACGgGGGGGaCGGGGg -3' miRNA: 3'- cagCCUCag---CCUGCgCCUCCaGCCCC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 34776 | 0.72 | 0.366667 |
Target: 5'- cUCGGAcUCGGACuCGGAGGgcUCGGaGGa -3' miRNA: 3'- cAGCCUcAGCCUGcGCCUCC--AGCC-CC- -5' |
|||||||
23670 | 5' | -60.9 | NC_005261.1 | + | 69301 | 0.72 | 0.366667 |
Target: 5'- -gCGGGGcgcCGGugGCGGcGGgagCGGGGg -3' miRNA: 3'- caGCCUCa--GCCugCGCCuCCa--GCCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home