miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23670 5' -60.9 NC_005261.1 + 33037 0.67 0.637857
Target:  5'- -gCGGAG-CGucCGCGGAGGgccaggacucggcgcCGGGGa -3'
miRNA:   3'- caGCCUCaGCcuGCGCCUCCa--------------GCCCC- -5'
23670 5' -60.9 NC_005261.1 + 18380 0.68 0.628089
Target:  5'- aGUCGGAGgucccaaagccgcugCGGACGCGGGccUCGGa- -3'
miRNA:   3'- -CAGCCUCa--------------GCCUGCGCCUccAGCCcc -5'
23670 5' -60.9 NC_005261.1 + 57184 0.68 0.617349
Target:  5'- -gUGGGGUCGG-CGggaaGGGGGggGGGGg -3'
miRNA:   3'- caGCCUCAGCCuGCg---CCUCCagCCCC- -5'
23670 5' -60.9 NC_005261.1 + 70183 0.68 0.607595
Target:  5'- --gGGAG-CGGcCGCuguGGAGG-CGGGGg -3'
miRNA:   3'- cagCCUCaGCCuGCG---CCUCCaGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 74867 0.68 0.607595
Target:  5'- -gCGGAGgaggCGGACGCGGcGG-CGGc- -3'
miRNA:   3'- caGCCUCa---GCCUGCGCCuCCaGCCcc -5'
23670 5' -60.9 NC_005261.1 + 97638 0.68 0.603698
Target:  5'- -gCGGAG-CGGGCGCGGgugccgcaccuGGGgggccggcguccgCGGGGc -3'
miRNA:   3'- caGCCUCaGCCUGCGCC-----------UCCa------------GCCCC- -5'
23670 5' -60.9 NC_005261.1 + 23637 0.68 0.597858
Target:  5'- --gGGGGUCGGGCGgcUGGAaGGgagaGGGGa -3'
miRNA:   3'- cagCCUCAGCCUGC--GCCU-CCag--CCCC- -5'
23670 5' -60.9 NC_005261.1 + 29009 0.68 0.597858
Target:  5'- -cCGGGGcCGaugccaaaGACGCGaGGGUUGGGGa -3'
miRNA:   3'- caGCCUCaGC--------CUGCGCcUCCAGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 22725 0.68 0.597858
Target:  5'- -cCGGAggaccagcgccaGUCGGGCGCGGGGcGgCGGcGGc -3'
miRNA:   3'- caGCCU------------CAGCCUGCGCCUC-CaGCC-CC- -5'
23670 5' -60.9 NC_005261.1 + 24019 0.68 0.597858
Target:  5'- --gGGAGggggCGGAgCGCGGGGuUCGGGu -3'
miRNA:   3'- cagCCUCa---GCCU-GCGCCUCcAGCCCc -5'
23670 5' -60.9 NC_005261.1 + 68075 0.68 0.588144
Target:  5'- gGUCucGGUCGccCGCGGGGG-CGGGGa -3'
miRNA:   3'- -CAGccUCAGCcuGCGCCUCCaGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 98343 0.68 0.588144
Target:  5'- -cCGu-GUC-GACGCGGGGG-CGGGGg -3'
miRNA:   3'- caGCcuCAGcCUGCGCCUCCaGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 98687 0.68 0.588144
Target:  5'- -cCGGGGcCGGagGCGCGGccggagcugGGGcCGGGGu -3'
miRNA:   3'- caGCCUCaGCC--UGCGCC---------UCCaGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 69746 0.69 0.559199
Target:  5'- -gCGGAGgaggaggCGaGCGCGGGGGgcggcgcCGGGGa -3'
miRNA:   3'- caGCCUCa------GCcUGCGCCUCCa------GCCCC- -5'
23670 5' -60.9 NC_005261.1 + 32970 0.69 0.559199
Target:  5'- --gGGAGgCGGGagaggagggacCGCGGAGGagGGGGc -3'
miRNA:   3'- cagCCUCaGCCU-----------GCGCCUCCagCCCC- -5'
23670 5' -60.9 NC_005261.1 + 2454 0.69 0.539176
Target:  5'- cUCGGGGUcgaaggcgagcgcCGGGCGCcaGGGcUCGGGGa -3'
miRNA:   3'- cAGCCUCA-------------GCCUGCGccUCC-AGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 55286 0.69 0.534443
Target:  5'- -cCGGAGgcggGGGCGCugaagagccggugcgGGGGGUCaGGGGg -3'
miRNA:   3'- caGCCUCag--CCUGCG---------------CCUCCAG-CCCC- -5'
23670 5' -60.9 NC_005261.1 + 43777 0.69 0.530668
Target:  5'- -gUGGGG-CGGcGCGCGGAGGgcgccgCGGGu -3'
miRNA:   3'- caGCCUCaGCC-UGCGCCUCCa-----GCCCc -5'
23670 5' -60.9 NC_005261.1 + 11812 0.69 0.530668
Target:  5'- -gCGGAGggGGAaagagaGUGGGGG-CGGGGg -3'
miRNA:   3'- caGCCUCagCCUg-----CGCCUCCaGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 121112 0.7 0.502683
Target:  5'- -gCGG-GUCcucuaGGGCGCGGAGGcgCGGGc -3'
miRNA:   3'- caGCCuCAG-----CCUGCGCCUCCa-GCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.