miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23670 5' -60.9 NC_005261.1 + 52 0.71 0.431556
Target:  5'- uUUGGGGgggggccgaaaUCGGcgcGCGCGGGGG-CGGGGu -3'
miRNA:   3'- cAGCCUC-----------AGCC---UGCGCCUCCaGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 515 0.71 0.414705
Target:  5'- --gGGGGggaGGGCGCGGGcGGgCGGGGg -3'
miRNA:   3'- cagCCUCag-CCUGCGCCU-CCaGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 994 0.77 0.190621
Target:  5'- -gCGGAGgagaCGGGgGCGGGGGgCGGGGg -3'
miRNA:   3'- caGCCUCa---GCCUgCGCCUCCaGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 2454 0.69 0.539176
Target:  5'- cUCGGGGUcgaaggcgagcgcCGGGCGCcaGGGcUCGGGGa -3'
miRNA:   3'- cAGCCUCA-------------GCCUGCGccUCC-AGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 5344 0.67 0.656398
Target:  5'- gGUCGGccagccggcuGGUCGGugGauaCGGAGa-CGGGGg -3'
miRNA:   3'- -CAGCC----------UCAGCCugC---GCCUCcaGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 9617 0.76 0.241036
Target:  5'- -cCGGGGUgGGcAgGCGGGGGUgGGGGc -3'
miRNA:   3'- caGCCUCAgCC-UgCGCCUCCAgCCCC- -5'
23670 5' -60.9 NC_005261.1 + 11426 0.7 0.493497
Target:  5'- --aGGAGgCGGGCGgGGGGGgCGGcGGa -3'
miRNA:   3'- cagCCUCaGCCUGCgCCUCCaGCC-CC- -5'
23670 5' -60.9 NC_005261.1 + 11466 0.86 0.053137
Target:  5'- -gCGGAG-CGGGCGCGGAGGggCGGGGc -3'
miRNA:   3'- caGCCUCaGCCUGCGCCUCCa-GCCCC- -5'
23670 5' -60.9 NC_005261.1 + 11812 0.69 0.530668
Target:  5'- -gCGGAGggGGAaagagaGUGGGGG-CGGGGg -3'
miRNA:   3'- caGCCUCagCCUg-----CGCCUCCaGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 13089 0.66 0.695161
Target:  5'- cGUCGG---CGGGCgGCGGGcucGGcUCGGGGg -3'
miRNA:   3'- -CAGCCucaGCCUG-CGCCU---CC-AGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 13671 0.66 0.695161
Target:  5'- -gCGGGGg-GGGCGCGGGGcGcgCGGGc -3'
miRNA:   3'- caGCCUCagCCUGCGCCUC-Ca-GCCCc -5'
23670 5' -60.9 NC_005261.1 + 13702 0.74 0.282609
Target:  5'- -gCGGGG-CGGGCuggggGCGGGGGUgGGGGu -3'
miRNA:   3'- caGCCUCaGCCUG-----CGCCUCCAgCCCC- -5'
23670 5' -60.9 NC_005261.1 + 15053 0.81 0.100613
Target:  5'- --gGGGGUCGGGguCGCGGcgGGGUCGGGGg -3'
miRNA:   3'- cagCCUCAGCCU--GCGCC--UCCAGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 16173 0.71 0.414705
Target:  5'- --aGGGGgcgCGGGCgugGCGGGGGUgggCGGGGg -3'
miRNA:   3'- cagCCUCa--GCCUG---CGCCUCCA---GCCCC- -5'
23670 5' -60.9 NC_005261.1 + 18380 0.68 0.628089
Target:  5'- aGUCGGAGgucccaaagccgcugCGGACGCGGGccUCGGa- -3'
miRNA:   3'- -CAGCCUCa--------------GCCUGCGCCUccAGCCcc -5'
23670 5' -60.9 NC_005261.1 + 22725 0.68 0.597858
Target:  5'- -cCGGAggaccagcgccaGUCGGGCGCGGGGcGgCGGcGGc -3'
miRNA:   3'- caGCCU------------CAGCCUGCGCCUC-CaGCC-CC- -5'
23670 5' -60.9 NC_005261.1 + 23637 0.68 0.597858
Target:  5'- --gGGGGUCGGGCGgcUGGAaGGgagaGGGGa -3'
miRNA:   3'- cagCCUCAGCCUGC--GCCU-CCag--CCCC- -5'
23670 5' -60.9 NC_005261.1 + 23926 0.66 0.714284
Target:  5'- -cUGGGGUgGGcucaccuCGCGGcGGGuUCGGGGu -3'
miRNA:   3'- caGCCUCAgCCu------GCGCC-UCC-AGCCCC- -5'
23670 5' -60.9 NC_005261.1 + 24019 0.68 0.597858
Target:  5'- --gGGAGggggCGGAgCGCGGGGuUCGGGu -3'
miRNA:   3'- cagCCUCa---GCCU-GCGCCUCcAGCCCc -5'
23670 5' -60.9 NC_005261.1 + 25381 0.67 0.675844
Target:  5'- -cCGGca-CGG-CGCGcGGGUCGGGGg -3'
miRNA:   3'- caGCCucaGCCuGCGCcUCCAGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.