miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23672 3' -55.1 NC_005261.1 + 121196 0.66 0.939864
Target:  5'- gGGCCGggc-CcGGGGCcgcgggccGGAGACUGCa -3'
miRNA:   3'- -CCGGCaguaGaCCCCG--------CUUCUGAUGc -5'
23672 3' -55.1 NC_005261.1 + 100401 0.66 0.934531
Target:  5'- cGCCGUUGUCcagcggGGGGCGcaucGAGGCgcccgccUGCGa -3'
miRNA:   3'- cCGGCAGUAGa-----CCCCGC----UUCUG-------AUGC- -5'
23672 3' -55.1 NC_005261.1 + 61021 0.66 0.929951
Target:  5'- cGCCGUCG--UGGGGCGGc-ACcGCGg -3'
miRNA:   3'- cCGGCAGUagACCCCGCUucUGaUGC- -5'
23672 3' -55.1 NC_005261.1 + 1407 0.66 0.929951
Target:  5'- cGGCCG-CGgc-GGcGGCGggGGCgGCGc -3'
miRNA:   3'- -CCGGCaGUagaCC-CCGCuuCUGaUGC- -5'
23672 3' -55.1 NC_005261.1 + 23556 0.66 0.929951
Target:  5'- aGCCGUCGcaggUGGGGC-AGGGCUGg- -3'
miRNA:   3'- cCGGCAGUag--ACCCCGcUUCUGAUgc -5'
23672 3' -55.1 NC_005261.1 + 23246 0.66 0.924635
Target:  5'- gGGCCGgccugCUcGGGCGAGaGCUGCa -3'
miRNA:   3'- -CCGGCagua-GAcCCCGCUUcUGAUGc -5'
23672 3' -55.1 NC_005261.1 + 125080 0.66 0.919078
Target:  5'- gGGCCGUCAaguagUCUugcGGGGCGcccccuuccGGGGC-GCGc -3'
miRNA:   3'- -CCGGCAGU-----AGA---CCCCGC---------UUCUGaUGC- -5'
23672 3' -55.1 NC_005261.1 + 47225 0.66 0.919078
Target:  5'- cGCCGgggcUCAgCUGGGGCcccagaaagccGAGGAcCUGCGc -3'
miRNA:   3'- cCGGC----AGUaGACCCCG-----------CUUCU-GAUGC- -5'
23672 3' -55.1 NC_005261.1 + 94721 0.66 0.913281
Target:  5'- cGCCGcUAccUCcGGGGCGggGACaccgACGc -3'
miRNA:   3'- cCGGCaGU--AGaCCCCGCuuCUGa---UGC- -5'
23672 3' -55.1 NC_005261.1 + 8831 0.66 0.913281
Target:  5'- cGCCGggCAag-GGGGCGggGACa--- -3'
miRNA:   3'- cCGGCa-GUagaCCCCGCuuCUGaugc -5'
23672 3' -55.1 NC_005261.1 + 98572 0.67 0.907246
Target:  5'- cGGCCGUCcuccgcgggCUcGGGCGAguAGGCgGCGc -3'
miRNA:   3'- -CCGGCAGua-------GAcCCCGCU--UCUGaUGC- -5'
23672 3' -55.1 NC_005261.1 + 22091 0.67 0.907246
Target:  5'- cGCCG-CGUg-GGGGCGGgagggcGGugUGCGg -3'
miRNA:   3'- cCGGCaGUAgaCCCCGCU------UCugAUGC- -5'
23672 3' -55.1 NC_005261.1 + 90394 0.67 0.907246
Target:  5'- cGCCGgCGgggCUGGcgcccGGCGcGGACUACGc -3'
miRNA:   3'- cCGGCaGUa--GACC-----CCGCuUCUGAUGC- -5'
23672 3' -55.1 NC_005261.1 + 137744 0.67 0.907246
Target:  5'- gGGCCGaaAUCggcgcgcgcgGGGGCGggGuGCgggGCGc -3'
miRNA:   3'- -CCGGCagUAGa---------CCCCGCuuC-UGa--UGC- -5'
23672 3' -55.1 NC_005261.1 + 61 0.67 0.907246
Target:  5'- gGGCCGaaAUCggcgcgcgcgGGGGCGggGuGCgggGCGc -3'
miRNA:   3'- -CCGGCagUAGa---------CCCCGCuuC-UGa--UGC- -5'
23672 3' -55.1 NC_005261.1 + 29066 0.67 0.905389
Target:  5'- cGGCCGaCAcuggauuuagggacUCgGGGGCcGggGACU-CGg -3'
miRNA:   3'- -CCGGCaGU--------------AGaCCCCG-CuuCUGAuGC- -5'
23672 3' -55.1 NC_005261.1 + 133215 0.67 0.900974
Target:  5'- cGCCGUCGaggccgagCUGGGGCccuacauggcGGAGcACUACc -3'
miRNA:   3'- cCGGCAGUa-------GACCCCG----------CUUC-UGAUGc -5'
23672 3' -55.1 NC_005261.1 + 97667 0.67 0.900974
Target:  5'- gGGCCGgCGUCcgcGGGGCuugggcGGGGCUGCc -3'
miRNA:   3'- -CCGGCaGUAGa--CCCCGc-----UUCUGAUGc -5'
23672 3' -55.1 NC_005261.1 + 134471 0.67 0.900974
Target:  5'- uGGCCGcCAUCgugGGcGGCGucGucgcgcugcugcACUACGa -3'
miRNA:   3'- -CCGGCaGUAGa--CC-CCGCuuC------------UGAUGC- -5'
23672 3' -55.1 NC_005261.1 + 111592 0.67 0.900974
Target:  5'- aGGCCGagcacgCGgagUGGGcGCGGcuGGGCUGCGg -3'
miRNA:   3'- -CCGGCa-----GUag-ACCC-CGCU--UCUGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.