miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23672 5' -61.6 NC_005261.1 + 34713 0.66 0.723972
Target:  5'- cCUCG-AG-CCUCAgcggucggcgcccccUGGCGGCC-GCGGg -3'
miRNA:   3'- -GGGCaUCuGGAGU---------------GCCGCCGGcCGCC- -5'
23672 5' -61.6 NC_005261.1 + 131748 0.66 0.720215
Target:  5'- -aCGcGGACggCACGcCGGCCGGCGcGg -3'
miRNA:   3'- ggGCaUCUGgaGUGCcGCCGGCCGC-C- -5'
23672 5' -61.6 NC_005261.1 + 67512 0.66 0.720215
Target:  5'- --aGUAGGCCagcgUCGCcGCGGCgcccgCGGCGGc -3'
miRNA:   3'- gggCAUCUGG----AGUGcCGCCG-----GCCGCC- -5'
23672 5' -61.6 NC_005261.1 + 55173 0.66 0.720215
Target:  5'- gCCGgcGGCUcgCGgGGCGGaUCGGCGc -3'
miRNA:   3'- gGGCauCUGGa-GUgCCGCC-GGCCGCc -5'
23672 5' -61.6 NC_005261.1 + 25362 0.66 0.720215
Target:  5'- aCCCGcuUGGAacaaaaacCCggCACGGCGcGCgGGuCGGg -3'
miRNA:   3'- -GGGC--AUCU--------GGa-GUGCCGC-CGgCC-GCC- -5'
23672 5' -61.6 NC_005261.1 + 131296 0.66 0.720215
Target:  5'- gCCGcAG-CCUCAaGGUGGCCGaccCGGa -3'
miRNA:   3'- gGGCaUCuGGAGUgCCGCCGGCc--GCC- -5'
23672 5' -61.6 NC_005261.1 + 118867 0.66 0.719274
Target:  5'- gCCCGcggcccuGGCCUCggccaccGCgGGCGcGCUGGUGGc -3'
miRNA:   3'- -GGGCau-----CUGGAG-------UG-CCGC-CGGCCGCC- -5'
23672 5' -61.6 NC_005261.1 + 68809 0.66 0.717391
Target:  5'- uCCCGcGGACC-CACaacgccugggccguGGCGGCCcccccgucccGCGGg -3'
miRNA:   3'- -GGGCaUCUGGaGUG--------------CCGCCGGc---------CGCC- -5'
23672 5' -61.6 NC_005261.1 + 63006 0.66 0.710777
Target:  5'- cCUCGgcGGCCgcgcccgCGCGG-GcGCCGGCGc -3'
miRNA:   3'- -GGGCauCUGGa------GUGCCgC-CGGCCGCc -5'
23672 5' -61.6 NC_005261.1 + 27363 0.66 0.710777
Target:  5'- gCCG--GACCggCGCGa-GGCCGGUGGg -3'
miRNA:   3'- gGGCauCUGGa-GUGCcgCCGGCCGCC- -5'
23672 5' -61.6 NC_005261.1 + 96324 0.66 0.710777
Target:  5'- cCCUGacuGGCCUgGC-GCGGCCGcGCGc -3'
miRNA:   3'- -GGGCau-CUGGAgUGcCGCCGGC-CGCc -5'
23672 5' -61.6 NC_005261.1 + 43413 0.66 0.710777
Target:  5'- gCCGggggcGGCCUC-C-GCcGCCGGCGGg -3'
miRNA:   3'- gGGCau---CUGGAGuGcCGcCGGCCGCC- -5'
23672 5' -61.6 NC_005261.1 + 95588 0.66 0.710777
Target:  5'- cCCCGgcGACUcgCACcGCaccGGCCGGCu- -3'
miRNA:   3'- -GGGCauCUGGa-GUGcCG---CCGGCCGcc -5'
23672 5' -61.6 NC_005261.1 + 31467 0.66 0.710777
Target:  5'- gCCGgcGGCCUgAgUGGCcGCCGGUGc -3'
miRNA:   3'- gGGCauCUGGAgU-GCCGcCGGCCGCc -5'
23672 5' -61.6 NC_005261.1 + 31671 0.66 0.710777
Target:  5'- gCCUGc-GGCUggcCGCGGCGcGgCGGCGGc -3'
miRNA:   3'- -GGGCauCUGGa--GUGCCGC-CgGCCGCC- -5'
23672 5' -61.6 NC_005261.1 + 94982 0.66 0.710777
Target:  5'- aCgCGUAGGCCcCGCGcGCGccccGCCcugcggGGCGGg -3'
miRNA:   3'- -GgGCAUCUGGaGUGC-CGC----CGG------CCGCC- -5'
23672 5' -61.6 NC_005261.1 + 82241 0.66 0.707934
Target:  5'- cCCCGUAGACgCUCACGcGCaGGgucuucuccagcucCCGccgcuggucGCGGa -3'
miRNA:   3'- -GGGCAUCUG-GAGUGC-CG-CC--------------GGC---------CGCC- -5'
23672 5' -61.6 NC_005261.1 + 73089 0.66 0.705085
Target:  5'- gCgCGUAGGCguugcgCACGGCGGCCagaaagcccgcguccGcGCGGu -3'
miRNA:   3'- -GgGCAUCUGga----GUGCCGCCGG---------------C-CGCC- -5'
23672 5' -61.6 NC_005261.1 + 105240 0.66 0.705085
Target:  5'- gCCGU-GAUCU-GCGGCggcauccgcgcgacaGGCuCGGCGGg -3'
miRNA:   3'- gGGCAuCUGGAgUGCCG---------------CCG-GCCGCC- -5'
23672 5' -61.6 NC_005261.1 + 98447 0.66 0.705085
Target:  5'- gCCgGUAGGCggCGCccgcaaaauccgacgGGCGGCCGuccuccGCGGg -3'
miRNA:   3'- -GGgCAUCUGgaGUG---------------CCGCCGGC------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.