Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23673 | 3' | -55.3 | NC_005261.1 | + | 4881 | 0.66 | 0.936611 |
Target: 5'- cGGcCgcCUCAgCCGCGGC--CGCCUCGg -3' miRNA: 3'- -CCaGa-GAGUaGGUGUCGcaGCGGAGC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 124743 | 0.68 | 0.845489 |
Target: 5'- --cCUCUCcccgcagCCGCAGCGgcCGCCUCc -3' miRNA: 3'- ccaGAGAGua-----GGUGUCGCa-GCGGAGc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 12790 | 0.68 | 0.85343 |
Target: 5'- cGUCggcgagCUCGUCguCGGCGUCGCUg-- -3' miRNA: 3'- cCAGa-----GAGUAGguGUCGCAGCGGagc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 99615 | 0.67 | 0.868703 |
Target: 5'- -----gUCGUCCACAGCGcCGCCa-- -3' miRNA: 3'- ccagagAGUAGGUGUCGCaGCGGagc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 49971 | 0.67 | 0.876023 |
Target: 5'- cGUCg-UCAUCCcCGGCGcCGCCgUCGu -3' miRNA: 3'- cCAGagAGUAGGuGUCGCaGCGG-AGC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 100901 | 0.67 | 0.876023 |
Target: 5'- cGGcCUCgccgcgCAccgCCGCgAGCGUCGCCUg- -3' miRNA: 3'- -CCaGAGa-----GUa--GGUG-UCGCAGCGGAgc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 30022 | 0.67 | 0.876023 |
Target: 5'- cGGUgCUCUCggCUGCAGCGg-GCCgCGg -3' miRNA: 3'- -CCA-GAGAGuaGGUGUCGCagCGGaGC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 91120 | 0.67 | 0.883125 |
Target: 5'- cGUCUCgcgCG-CCGCGGcCGagGCCUCa -3' miRNA: 3'- cCAGAGa--GUaGGUGUC-GCagCGGAGc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 93928 | 0.67 | 0.890003 |
Target: 5'- cGGgCUUgcgcCGUCCGCgGGCGcCGCCUCc -3' miRNA: 3'- -CCaGAGa---GUAGGUG-UCGCaGCGGAGc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 124845 | 0.68 | 0.837353 |
Target: 5'- aGGUC-CUCgcgcagGUCUGCGGCGUCGUCg-- -3' miRNA: 3'- -CCAGaGAG------UAGGUGUCGCAGCGGagc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 125326 | 0.69 | 0.794022 |
Target: 5'- cGGcCUCggCGUCCGCAGCG-CGCagggCGu -3' miRNA: 3'- -CCaGAGa-GUAGGUGUCGCaGCGga--GC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 118708 | 0.69 | 0.794022 |
Target: 5'- uGGUCcugCUCAgcgUCgcgggcgggCACGGCGUCGCgCUCGc -3' miRNA: 3'- -CCAGa--GAGU---AG---------GUGUCGCAGCG-GAGC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 117247 | 0.77 | 0.355029 |
Target: 5'- gGGUCgggUCUCGUUCGCcGCG-CGCCUCGa -3' miRNA: 3'- -CCAG---AGAGUAGGUGuCGCaGCGGAGC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 50477 | 0.76 | 0.43081 |
Target: 5'- aGGacgCUCgCGUCCGCGGCGgcccccagCGCCUCGc -3' miRNA: 3'- -CCa--GAGaGUAGGUGUCGCa-------GCGGAGC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 80455 | 0.75 | 0.486284 |
Target: 5'- cGG-CUCUCGUCgCGCAGCaucucGUCcGCCUCGc -3' miRNA: 3'- -CCaGAGAGUAG-GUGUCG-----CAG-CGGAGC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 13849 | 0.74 | 0.505525 |
Target: 5'- cGUCUcCUCGUCgC-CGGCGUCGCCggCGg -3' miRNA: 3'- cCAGA-GAGUAG-GuGUCGCAGCGGa-GC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 115479 | 0.71 | 0.677274 |
Target: 5'- cGGUCgcgggCUCggCCGCGGCGgcgCGCCg-- -3' miRNA: 3'- -CCAGa----GAGuaGGUGUCGCa--GCGGagc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 28301 | 0.71 | 0.687424 |
Target: 5'- cGUCUCcuUCGUUCGCGGCGcccgCGCuCUCGc -3' miRNA: 3'- cCAGAG--AGUAGGUGUCGCa---GCG-GAGC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 122510 | 0.71 | 0.697527 |
Target: 5'- cGGgCUCUCAaCCAUGGgGUCGCCa-- -3' miRNA: 3'- -CCaGAGAGUaGGUGUCgCAGCGGagc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 104484 | 0.7 | 0.747038 |
Target: 5'- -cUCcagCUCGUCCACGGCGUCGUg--- -3' miRNA: 3'- ccAGa--GAGUAGGUGUCGCAGCGgagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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