Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23674 | 3' | -54 | NC_005261.1 | + | 27081 | 1.08 | 0.004317 |
Target: 5'- gCGGCAAUAGGCAGAUGAGCUCGGACGc -3' miRNA: 3'- -GCCGUUAUCCGUCUACUCGAGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 1014 | 0.8 | 0.288613 |
Target: 5'- gGGCGggGGGCGGGUGGGCUuuugcggagggcggCGGGCGg -3' miRNA: 3'- gCCGUuaUCCGUCUACUCGA--------------GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 109860 | 0.76 | 0.473543 |
Target: 5'- gCGGCuccuggGGGCAGcgGGGCccgCGGGCGg -3' miRNA: 3'- -GCCGuua---UCCGUCuaCUCGa--GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 24395 | 0.75 | 0.49292 |
Target: 5'- uCGGCGGcgGGGCGGuccuggGGGCUCGGAUc -3' miRNA: 3'- -GCCGUUa-UCCGUCua----CUCGAGCCUGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 110806 | 0.75 | 0.502745 |
Target: 5'- gGGCGAggaggcggGGGCGGAcgGGGCcgCGGACGa -3' miRNA: 3'- gCCGUUa-------UCCGUCUa-CUCGa-GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 59612 | 0.74 | 0.594308 |
Target: 5'- gCGGCGc--GGCGGAUGAGCgccaGGACc -3' miRNA: 3'- -GCCGUuauCCGUCUACUCGag--CCUGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 16160 | 0.74 | 0.573583 |
Target: 5'- cCGGCA--GGGCAGuaggGGGCgCGGGCGu -3' miRNA: 3'- -GCCGUuaUCCGUCua--CUCGaGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 97744 | 0.73 | 0.625591 |
Target: 5'- uGGCAG-GGGCGGGgcGGGCUCGG-CGg -3' miRNA: 3'- gCCGUUaUCCGUCUa-CUCGAGCCuGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 12771 | 0.73 | 0.646485 |
Target: 5'- gCGGCGGU-GGCGGG-GGGCUCGucGGCGa -3' miRNA: 3'- -GCCGUUAuCCGUCUaCUCGAGC--CUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 84109 | 0.72 | 0.708595 |
Target: 5'- gGGCGggAUGGGgAGggGGGCagCGGGCGg -3' miRNA: 3'- gCCGU--UAUCCgUCuaCUCGa-GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 2532 | 0.72 | 0.708595 |
Target: 5'- gCGGCAGUAGGCcgccagcgccgcGGcgcUGGGCgCGGGCGu -3' miRNA: 3'- -GCCGUUAUCCG------------UCu--ACUCGaGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 50998 | 0.72 | 0.688061 |
Target: 5'- gCGGCGcGUGGGCGcGGcggGAGCUCGG-CGa -3' miRNA: 3'- -GCCGU-UAUCCGU-CUa--CUCGAGCCuGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 9628 | 0.72 | 0.688061 |
Target: 5'- aGGCGGggguggGGGCuGGGUGGGCggggcccacUCGGGCGg -3' miRNA: 3'- gCCGUUa-----UCCG-UCUACUCG---------AGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 97702 | 0.72 | 0.676679 |
Target: 5'- gGGCGGUGgggagacGGCGGGUG-GCcCGGGCGg -3' miRNA: 3'- gCCGUUAU-------CCGUCUACuCGaGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 35692 | 0.72 | 0.676679 |
Target: 5'- cCGGCGagccccgGUGGGCcGG-GGGCUCGGugGc -3' miRNA: 3'- -GCCGU-------UAUCCGuCUaCUCGAGCCugC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 2814 | 0.71 | 0.718765 |
Target: 5'- gGGCc--GGGCGGccccagcccGAGCUCGGGCGg -3' miRNA: 3'- gCCGuuaUCCGUCua-------CUCGAGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 14130 | 0.71 | 0.718765 |
Target: 5'- gGGCGGUGGGCAGuc--GCUCgcgaGGACGc -3' miRNA: 3'- gCCGUUAUCCGUCuacuCGAG----CCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 97591 | 0.71 | 0.718765 |
Target: 5'- gGGCGGagcGGGCGGAgcGGGCggagCGGGCGg -3' miRNA: 3'- gCCGUUa--UCCGUCUa-CUCGa---GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 24118 | 0.71 | 0.748774 |
Target: 5'- gGGCccgAGGCGGGgguggGGGCUgGGugGg -3' miRNA: 3'- gCCGuuaUCCGUCUa----CUCGAgCCugC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 12362 | 0.71 | 0.758577 |
Target: 5'- gCGGCAAccGGCGcgucuucgauGGUGAGCUCgaGGAUGg -3' miRNA: 3'- -GCCGUUauCCGU----------CUACUCGAG--CCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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