Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23674 | 3' | -54 | NC_005261.1 | + | 15959 | 0.68 | 0.886525 |
Target: 5'- gGGCGAguggcGGGCGGGggaGGGCcCGGGCc -3' miRNA: 3'- gCCGUUa----UCCGUCUa--CUCGaGCCUGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 129606 | 0.68 | 0.879394 |
Target: 5'- gCGGCAAUuucGCGGcgGGG-UCGGGCGc -3' miRNA: 3'- -GCCGUUAuc-CGUCuaCUCgAGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 74855 | 0.68 | 0.872034 |
Target: 5'- gCGGCGcgccGGGCGGAgGAGg-CGGACGc -3' miRNA: 3'- -GCCGUua--UCCGUCUaCUCgaGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 128886 | 0.68 | 0.872034 |
Target: 5'- aGGCGG-GGGcCGGGUGGGaggCGGGCGu -3' miRNA: 3'- gCCGUUaUCC-GUCUACUCga-GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 82651 | 0.67 | 0.908993 |
Target: 5'- uGGUcGUAGcacgcGCGGAUGAGCgccucgagccgcucgUCGGGCGc -3' miRNA: 3'- gCCGuUAUC-----CGUCUACUCG---------------AGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 96833 | 0.67 | 0.912666 |
Target: 5'- uCGGCGGUgucgAGGcCGGGgucgacgggGGGCUCGGGgGg -3' miRNA: 3'- -GCCGUUA----UCC-GUCUa--------CUCGAGCCUgC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 23479 | 0.67 | 0.917425 |
Target: 5'- gCGGCGAgugcgcgggcccgccUGGGCAGGcgcGGGCccugggagcacgcggUCGGGCGa -3' miRNA: 3'- -GCCGUU---------------AUCCGUCUa--CUCG---------------AGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 32926 | 0.67 | 0.91859 |
Target: 5'- gGGCGGcGGGCGGGggggGGGCggGGAgGg -3' miRNA: 3'- gCCGUUaUCCGUCUa---CUCGagCCUgC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 97952 | 0.67 | 0.91859 |
Target: 5'- gCGGCAAcgAGGgAGGUG-GCggCGGAgCGg -3' miRNA: 3'- -GCCGUUa-UCCgUCUACuCGa-GCCU-GC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 114319 | 0.67 | 0.91859 |
Target: 5'- cCGGCAGUccggcgcaAGGUGGAcuGGCUCGaGCGg -3' miRNA: 3'- -GCCGUUA--------UCCGUCUacUCGAGCcUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 2595 | 0.67 | 0.91859 |
Target: 5'- gCGGCGgaagccgccGUcGGCGGcgGGGCcgcCGGGCGg -3' miRNA: 3'- -GCCGU---------UAuCCGUCuaCUCGa--GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 70561 | 0.67 | 0.906495 |
Target: 5'- -cGCA--GGGCGccgcGAaGAGCUCGGGCGc -3' miRNA: 3'- gcCGUuaUCCGU----CUaCUCGAGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 135093 | 0.67 | 0.906495 |
Target: 5'- gCGGCcc--GGCGGcgGAGCgcgaggCGGACc -3' miRNA: 3'- -GCCGuuauCCGUCuaCUCGa-----GCCUGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 69510 | 0.67 | 0.906495 |
Target: 5'- cCGGCGGcGGGCuGccgGAGCUggcgCGGGCGc -3' miRNA: 3'- -GCCGUUaUCCGuCua-CUCGA----GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 129735 | 0.67 | 0.906495 |
Target: 5'- gCGGCA--GGGCGGcgGGGCcCGGcCu -3' miRNA: 3'- -GCCGUuaUCCGUCuaCUCGaGCCuGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 35266 | 0.67 | 0.906495 |
Target: 5'- aGGCAGUGGuGguGAcGGGCggugagggaGGACGa -3' miRNA: 3'- gCCGUUAUC-CguCUaCUCGag-------CCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 26879 | 0.67 | 0.906495 |
Target: 5'- nGGgGGUGGGUGGGgggGGGCggGGGCGc -3' miRNA: 3'- gCCgUUAUCCGUCUa--CUCGagCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 32077 | 0.67 | 0.900079 |
Target: 5'- gCGGCGcugGGGCucGggGAGC-CGGACu -3' miRNA: 3'- -GCCGUua-UCCGu-CuaCUCGaGCCUGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 23887 | 0.67 | 0.900079 |
Target: 5'- gGGCGGgccGGCuaGGGUGGGCUCgcuGGGCu -3' miRNA: 3'- gCCGUUau-CCG--UCUACUCGAG---CCUGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 24017 | 0.67 | 0.924266 |
Target: 5'- aGGgGAggGGGCGGAgcgcgGGGUUCGGGUGg -3' miRNA: 3'- gCCgUUa-UCCGUCUa----CUCGAGCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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