Results 61 - 67 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23674 | 3' | -54 | NC_005261.1 | + | 129735 | 0.67 | 0.906495 |
Target: 5'- gCGGCA--GGGCGGcgGGGCcCGGcCu -3' miRNA: 3'- -GCCGUuaUCCGUCuaCUCGaGCCuGc -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 69510 | 0.67 | 0.906495 |
Target: 5'- cCGGCGGcGGGCuGccgGAGCUggcgCGGGCGc -3' miRNA: 3'- -GCCGUUaUCCGuCua-CUCGA----GCCUGC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 135093 | 0.67 | 0.906495 |
Target: 5'- gCGGCcc--GGCGGcgGAGCgcgaggCGGACc -3' miRNA: 3'- -GCCGuuauCCGUCuaCUCGa-----GCCUGc -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 70561 | 0.67 | 0.906495 |
Target: 5'- -cGCA--GGGCGccgcGAaGAGCUCGGGCGc -3' miRNA: 3'- gcCGUuaUCCGU----CUaCUCGAGCCUGC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 105866 | 0.66 | 0.93487 |
Target: 5'- uCGGCGAUgcgguuGGGCAGGUgcacgaucGAGCacaucucCGGGCGc -3' miRNA: 3'- -GCCGUUA------UCCGUCUA--------CUCGa------GCCUGC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 17063 | 0.66 | 0.952704 |
Target: 5'- gCGGCcGUccuggaaGGGCgacgGGAUGGGCcCGGugGu -3' miRNA: 3'- -GCCGuUA-------UCCG----UCUACUCGaGCCugC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 74515 | 0.66 | 0.953113 |
Target: 5'- gCGGCGccgGGGCc-AUGGcGCUUGGGCGc -3' miRNA: 3'- -GCCGUua-UCCGucUACU-CGAGCCUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home