Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23674 | 3' | -54 | NC_005261.1 | + | 24017 | 0.67 | 0.924266 |
Target: 5'- aGGgGAggGGGCGGAgcgcgGGGUUCGGGUGg -3' miRNA: 3'- gCCgUUa-UCCGUCUa----CUCGAGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 92119 | 0.67 | 0.929692 |
Target: 5'- -cGUGGUAGGCgaAGAauAGCUCGGGCu -3' miRNA: 3'- gcCGUUAUCCG--UCUacUCGAGCCUGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 98359 | 0.67 | 0.929692 |
Target: 5'- gCGGgGGUGGGCGc--GGGCUCuGGCGg -3' miRNA: 3'- -GCCgUUAUCCGUcuaCUCGAGcCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 33609 | 0.67 | 0.929692 |
Target: 5'- cCGGCGc-GGGCGGcgGGGCcCGGGgGc -3' miRNA: 3'- -GCCGUuaUCCGUCuaCUCGaGCCUgC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 105866 | 0.66 | 0.93487 |
Target: 5'- uCGGCGAUgcgguuGGGCAGGUgcacgaucGAGCacaucucCGGGCGc -3' miRNA: 3'- -GCCGUUA------UCCGUCUA--------CUCGa------GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 17063 | 0.66 | 0.952704 |
Target: 5'- gCGGCcGUccuggaaGGGCgacgGGAUGGGCcCGGugGu -3' miRNA: 3'- -GCCGuUA-------UCCG----UCUACUCGaGCCugC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 74515 | 0.66 | 0.953113 |
Target: 5'- gCGGCGccgGGGCc-AUGGcGCUUGGGCGc -3' miRNA: 3'- -GCCGUua-UCCGucUACU-CGAGCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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